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CSPI06G24150 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G24150
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationChr6:21699974..21700648
RNA-Seq ExpressionCSPI06G24150
SyntenyCSPI06G24150
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570402.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2776.11Show/hide
Query:  MASMAMTASSLPPPATKQPS---STARRPLIVAKASTSNQA----SNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAP
        MASM++TAS LP  AT QPS   + ARR L V KASTS  A    SN N+E+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAP
Subjt:  MASMAMTASSLPPPATKQPS---STARRPLIVAKASTSNQA----SNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAP

Query:  ICVTMPTARICRK
        ICVTMPTARICRK
Subjt:  ICVTMPTARICRK

XP_004143237.1 photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]5.3e-4297.17Show/hide
Query:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTAS LP  ATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]5.5e-3991.51Show/hide
Query:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTAS LP  ATKQPS+T RR LIVAKASTSN+ SNVN+EVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]1.1e-2875.45Show/hide
Query:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQA----SNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICV
        MASM++TAS LP  AT+  ++ ARR L V KASTS  A    SN N+E+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICV
Subjt:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQA----SNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]6.7e-3786.79Show/hide
Query:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTAS LP  A KQPS+ ARR L+VAKASTS+ ASNVN+E+KNVKVE+RQGRRELVAAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein2.6e-4297.17Show/hide
Query:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTAS LP  ATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic2.7e-3991.51Show/hide
Query:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTAS LP  ATKQPS+T RR LIVAKASTSN+ SNVN+EVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A5A7TID9 Photosystem II 5 kDa protein2.7e-3991.51Show/hide
Query:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
        MASMAMTAS LP  ATKQPS+T RR LIVAKASTSN+ SNVN+EVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A6J1FY72 photosystem II 5 kDa protein, chloroplastic5.6e-2975.45Show/hide
Query:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQA----SNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICV
        MASM++TAS LP  AT+  ++ ARR L V KASTS  A    SN N+E+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICV
Subjt:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQA----SNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic5.6e-2975.45Show/hide
Query:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQA----SNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICV
        MASM++TAS LP  AT+  ++ ARR L V KASTS  A    SN N+E+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICV
Subjt:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQA----SNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic2.8e-0945.95Show/hide
Query:  MASMAMTASSL--PPPATKQPSSTARRPLIVAKA---STSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMAD-EPARGSPEAKQKYAPI
        MAS+ M +S L     A  +  S  RR +++ KA     +N   + N E KN       GRREL  A    AA ++AK AMAD EP RG+PEAK+KY+ +
Subjt:  MASMAMTASSL--PPPATKQPSSTARRPLIVAKA---STSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMAD-EPARGSPEAKQKYAPI

Query:  CVTMPTARICR
        CVT PTARICR
Subjt:  CVTMPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic3.9e-1148.11Show/hide
Query:  MASMAMTASSLPPP-ATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMP
        MAS+ MT S L     TK      +R L+VA A+   Q  +V M  +  K E   GRRE++ AA   A  ++A  A A EP RGS EAK+ YAP+CVTMP
Subjt:  MASMAMTASSLPPP-ATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMP

Query:  TARICR
        TARICR
Subjt:  TARICR

Q39195 Photosystem II 5 kDa protein, chloroplastic6.0e-1250.47Show/hide
Query:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMA--DEPARGSPEAKQKYAPICVTM
        MASM MTA+  P  A K PS+T  R L V +ASTS+  +  ++EVK  +  S   RR+L+  A   A  +LAK AMA  +EP RG+  AK+KYA +CVTM
Subjt:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMA--DEPARGSPEAKQKYAPICVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein8.5e-1449.07Show/hide
Query:  MASMAMTASSLPPPAT--KQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMA-DEPARGSPEAKQKYAPICVT
        MASM MT+S LP  +      SS +RR L V KAS S   +++  + +    +S + RR+LV  A   A  +LAK AMA DEP RG+  AK+KYAP+CVT
Subjt:  MASMAMTASSLPPPAT--KQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMA-DEPARGSPEAKQKYAPICVT

Query:  MPTARICR
        MPTA+ICR
Subjt:  MPTARICR

AT3G21055.1 photosystem II subunit T4.2e-1350.47Show/hide
Query:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMA--DEPARGSPEAKQKYAPICVTM
        MASM MTA+  P  A K PS+T  R L V +ASTS+  +  ++EVK  +  S   RR+L+  A   A  +LAK AMA  +EP RG+  AK+KYA +CVTM
Subjt:  MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMA--DEPARGSPEAKQKYAPICVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTATGGCTATGACAGCTTCCTCCCTCCCCCCCCCAGCCACTAAGCAACCCTCCTCCACCGCCCGTCGACCCCTTATTGTTGCCAAAGCATCCACCTCTAACCA
AGCCTCCAATGTCAACATGGAGGTCAAGAATGTGAAGGTAGAGAGCAGGCAAGGGCGGCGGGAGTTGGTGGCGGCTGCTGTCACAGTAGCAGCTGCAACCTTGGCGAAGG
CGGCAATGGCGGATGAGCCGGCACGTGGGTCTCCTGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCTACTGCCCGTATTTGCCGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
GGAAATGGATGATGGCTTCAATGAAAGAATCAATACGAACCTTCAATCACTTCACTTCTCCCCCCACACTCCCAAACATAAACTACATCCATTCTATTTCTCCTTCACCC
AATTCCTCAGCTTACCAACAATCTCTCCAACCCCAATTCCCTAAATATGGCTTCTATGGCTATGACAGCTTCCTCCCTCCCCCCCCCAGCCACTAAGCAACCCTCCTCCA
CCGCCCGTCGACCCCTTATTGTTGCCAAAGCATCCACCTCTAACCAAGCCTCCAATGTCAACATGGAGGTCAAGAATGTGAAGGTAGAGAGCAGGCAAGGGCGGCGGGAG
TTGGTGGCGGCTGCTGTCACAGTAGCAGCTGCAACCTTGGCGAAGGCGGCAATGGCGGATGAGCCGGCACGTGGGTCTCCTGAAGCCAAGCAGAAGTATGCTCCAATCTG
TGTCACAATGCCTACTGCCCGTATTTGCCGCAAGTGATTTTGAAGAGATGTGTTTTGCTTTTTCTTTTTTTTCTCTGTTGTCTTTCTTCTTCATGTCTATTAAAACCCTT
CCATTTGGTTTCAGACTTTGAAGTTTGATTGTAAAATCTGTAAAACAAAGCTATGAATTGCCATGAATCTCTCTCTTCATGCCTTTTTTTTCTTCTTCTTGTTTTTGCCT
TTCTCAATCTCAAAG
Protein sequenceShow/hide protein sequence
MASMAMTASSLPPPATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK