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CSPI06G24230 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G24230
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA-binding protein S1FA
Genome locationChr6:21737742..21739530
RNA-Seq ExpressionCSPI06G24230
SyntenyCSPI06G24230
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006779 - DNA binding protein S1FA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143239.1 DNA-binding protein S1FA [Cucumis sativus]8.4e-41100Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
XP_008449267.1 PREDICTED: DNA-binding protein S1FA-like [Cucumis melo]7.1e-4098.88Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MEDDFDFGDKVPPAVNRM NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
XP_022962636.1 DNA-binding protein S1FA-like [Cucurbita moschata]3.3e-3791.01Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MEDDFDFGDKVPPAVNRMGNVIR+ +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQKTLPPK+KKPVSKKKMKRERLKQG+SAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
XP_022972581.1 DNA-binding protein S1FA-like [Cucurbita maxima]3.7e-3689.89Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MEDDFDFGDKVPPAVNRMGNVIRD +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQ TLP K+KKPVSKKKMKRERLKQG+SAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
XP_038881351.1 DNA-binding protein S1FA-like [Benincasa hispida]1.8e-3894.38Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MEDDFDFGDKVPPAVNRMGNVIRD +ARGFNPGLIVLLVVGGLL AFL GNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
TrEMBL top hitse value%identityAlignment
A0A0A0KEM3 DNA-binding protein S1FA4.1e-41100Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
A0A1S3BLN5 DNA-binding protein S1FA-like3.5e-4098.88Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MEDDFDFGDKVPPAVNRM NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
A0A5A7TZ88 DNA-binding protein S1FA-like3.5e-4098.88Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MEDDFDFGDKVPPAVNRM NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
A0A6J1HDT2 DNA-binding protein S1FA-like1.6e-3791.01Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MEDDFDFGDKVPPAVNRMGNVIR+ +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQKTLPPK+KKPVSKKKMKRERLKQG+SAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
A0A6J1I6D0 DNA-binding protein S1FA-like1.8e-3689.89Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MEDDFDFGDKVPPAVNRMGNVIRD +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQ TLP K+KKPVSKKKMKRERLKQG+SAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
SwissProt top hitse value%identityAlignment
P42552 DNA-binding protein S1FA2.4e-2276.47Show/hide
Query:  IRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        + + EA+G NPGLIVLLV+GGLL  FLVGN+ LY YAQK LPPKKKKP+SKKKMKRERLKQGV+ PGE
Subjt:  IRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
P42553 DNA-binding protein S1FA12.0e-2171.62Show/hide
Query:  NRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        ++  N+I +   +G NPG IVLLVV  LL  F VGNYALYMYAQKTLPP+KKKPVSKKK+KRE+LKQGVSAPGE
Subjt:  NRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
Q42337 DNA-binding protein S1FA27.7e-2175Show/hide
Query:  EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        EA+G NPGLIVLLV+GGLL  FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQGV  PGE
Subjt:  EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
Q7XLX6 DNA-binding protein S1FA24.5e-2172.86Show/hide
Query:  NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        NV+ +   +G NPG+IVL+VV   L  F VGNYALY+YAQKTLPP+KKKPVSKKKMKRE+LKQGVSAPGE
Subjt:  NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
Q93VI0 DNA-binding protein S1FA31.3e-2075Show/hide
Query:  EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        E++G NPGLIVLLV+GGLL  FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQGV  PGE
Subjt:  EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
Arabidopsis top hitse value%identityAlignment
AT2G37120.1 S1FA-like DNA-binding protein5.5e-2275Show/hide
Query:  EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        EA+G NPGLIVLLV+GGLL  FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQGV  PGE
Subjt:  EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
AT3G09735.1 S1FA-like DNA-binding protein9.3e-2275Show/hide
Query:  EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        E++G NPGLIVLLV+GGLL  FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQGV  PGE
Subjt:  EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
AT3G53370.1 S1FA-like DNA-binding protein1.6e-2176.56Show/hide
Query:  EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        EA+G NPGLIVLLVVGG L  FL+ NY LY+YAQK LPP+KKKPVSKKK+KRE+LKQGV  PGE
Subjt:  EARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
AT3G53370.2 S1FA-like DNA-binding protein2.2e-0775.76Show/hide
Query:  YAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +A K LPP+KKKPVSKKK+KRE+LKQGV  PGE
Subjt:  YAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATGATTTCGACTTCGGCGACAAGGTTCCGCCGGCCGTCAACCGCATGGGGAATGTGATTAGAGATGGAGAAGCAAGAGGATTCAACCCAGGACTGATTGTGCT
GCTTGTAGTTGGTGGGTTGCTATTTGCATTTCTTGTTGGGAATTATGCTCTCTACATGTATGCGCAGAAAACACTCCCCCCAAAAAAGAAGAAACCAGTTTCCAAAAAGA
AGATGAAGAGGGAGAGATTGAAGCAAGGTGTCTCTGCACCTGGAGAGTAG
mRNA sequenceShow/hide mRNA sequence
CGTTTGAAACCCCCATGGGCGGAAATACCGTAAATCCACTGATTATCCGCCATTTTCATATCTTCGTTCCTTTTGTATTTTTTCTCGAAGCTTCGTCAGTTCATCGTTTT
GGTACATAACTACAACACACCAGCTCTCTCCCATTCTCAATTTCAGCCATGGAAGATGATTTCGACTTCGGCGACAAGGTTCCGCCGGCCGTCAACCGCATGGGGAATGT
GATTAGAGATGGAGAAGCAAGAGGATTCAACCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGTTGCTATTTGCATTTCTTGTTGGGAATTATGCTCTCTACATGTATG
CGCAGAAAACACTCCCCCCAAAAAAGAAGAAACCAGTTTCCAAAAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTGTCTCTGCACCTGGAGAGTAGAAGTGTAGTGGT
AGACTTCTCTTATGTTTTGTATGCCTGTCCTTGATTTGGTTGAACTAACAAGTTCTACCAAATGAATTTCAATGTTTGAAGAGTTGTTTTGCCTATGTTGTTAAGTTGGT
TAGAATCTGAACATATAAGTAGAAGTTTATTGTCGCTTTGTATCCTTAGAGATGAGAAATAATAACAACATAGTTTATGTGGTATATTTTGATCAAATGCTAACCTTTTG
GTGCCC
Protein sequenceShow/hide protein sequence
MEDDFDFGDKVPPAVNRMGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE