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CSPI06G24370 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G24370
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L12-like
Genome locationChr6:21819713..21820717
RNA-Seq ExpressionCSPI06G24370
SyntenyCSPI06G24370
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003824 - catalytic activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:0140657 - ATP-dependent activity (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CEO96626.1 hypothetical protein PBRA_005235 [Plasmodiophora brassicae]3.3e-1541.27Show/hide
Query:  RNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGLTVLD
        R+ ++ + N  L I   L+++   +R AS ++LLNG+ ++L  RP  H  SN+ N ++R ++IVLDVL LLA+   L E  +D+   R +  DL LTVLD
Subjt:  RNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGLTVLD

Query:  SKLDGNSETLPFLGSLLGNVFSDLLW
        S+L G++ETL  L   L NV ++ LW
Subjt:  SKLDGNSETLPFLGSLLGNVFSDLLW

GER28707.1 auxin efflux carrier [Striga asiatica]2.4e-2144.96Show/hide
Query:  KRKKKSLSILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGN
        + K +  S+ RN ++ ISN LLQILR+L +    N N  +++LL+ + ++L H   AH+  +L+++V+RD+ +VLDVL LL V   L + LDDQ   R +
Subjt:  KRKKKSLSILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGN

Query:  HRDLGLTVLDSKLDGNSETLPFLGSLLGN
        H DL L VLD +LDG++E LP LG LLG+
Subjt:  HRDLGLTVLDSKLDGNSETLPFLGSLLGN

GER57718.1 glutamate dehydrogenase [Striga asiatica]4.4e-1541.79Show/hide
Query:  SLSILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLG
        S SI RN +IPI + LLQIL VL++D  P+ +A  E+LL+G+ +IL HR   H+  +L                             D S   G+  DLG
Subjt:  SLSILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLG

Query:  LTVLDSKLDGNSETLPFLGSLLGNVFSDLLWGET
        LTVL+S+LDG++E  P LG LLG+V +DLL GET
Subjt:  LTVLDSKLDGNSETLPFLGSLLGNVFSDLLWGET

KAG1332013.1 putative 60S ribosomal protein L12-like [Cocos nucifera]1.4e-2648.44Show/hide
Query:  NFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGLTVLDS
        + ++ + + LL++L VL +D   + +A  E+ L+G+ E+L H    H+P +LN++V+ D+ +VLDVLGLLAVA  L +GLD Q   RG+HR LGL VL  
Subjt:  NFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGLTVLDS

Query:  KLDGNSETLPFLGSLLGNVFSDLLWGET
        +LDG++E LP LG LLG+VF++LL GET
Subjt:  KLDGNSETLPFLGSLLGNVFSDLLWGET

XP_018737067.1 60S ribosomal protein L12 [Sugiyamaella lignohabitans]1.0e-1642.86Show/hide
Query:  LTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGLTVLDSKLDGNSETLPFLGSLL
        LT+D   +  +ST+NLL+ + ++L    G+H   N++++++ + T+VLDVL LL+V++G  +  D++   RGN+RD GLTVLD +L+ +++TL  LG  L
Subjt:  LTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGLTVLDSKLDGNSETLPFLGSLL

Query:  GNVFSDLLWGET
        G++F+DLL GET
Subjt:  GNVFSDLLWGET

TrEMBL top hitse value%identityAlignment
A0A0A0KIC9 Uncharacterized protein7.2e-72100Show/hide
Query:  MRKTKRKKKSLSILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSS
        MRKTKRKKKSLSILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSS
Subjt:  MRKTKRKKKSLSILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSS

Query:  SRGNHRDLGLTVLDSKLDGNSETLPFLGSLLGNVFSDLLWGET
        SRGNHRDLGLTVLDSKLDGNSETLPFLGSLLGNVFSDLLWGET
Subjt:  SRGNHRDLGLTVLDSKLDGNSETLPFLGSLLGNVFSDLLWGET

A0A161HG09 60S ribosomal protein L125.0e-1742.86Show/hide
Query:  LTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGLTVLDSKLDGNSETLPFLGSLL
        LT+D   +  +ST+NLL+ + ++L    G+H   N++++++ + T+VLDVL LL+V++G  +  D++   RGN+RD GLTVLD +L+ +++TL  LG  L
Subjt:  LTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGLTVLDSKLDGNSETLPFLGSLL

Query:  GNVFSDLLWGET
        G++F+DLL GET
Subjt:  GNVFSDLLWGET

A0A2P2KFV1 60S ribosomal protein L12-like2.0e-3455.3Show/hide
Query:  SILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGLT
        SI RNFN+ IS+ LLQ+L +L ++  PN +A  E+LLNG T++L H PG H+  +L++++K D+ +V +VLGLLAVA GL EGLDD+   RG+HRDL LT
Subjt:  SILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGLT

Query:  VLDSKLDGNSETLPFLGSLLGNVFSDLLWGET
        VLD +LDG++E LP LG  LGN+F+DLL  +T
Subjt:  VLDSKLDGNSETLPFLGSLLGNVFSDLLWGET

A0A5A7P7S6 Auxin efflux carrier1.2e-2144.96Show/hide
Query:  KRKKKSLSILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGN
        + K +  S+ RN ++ ISN LLQILR+L +    N N  +++LL+ + ++L H   AH+  +L+++V+RD+ +VLDVL LL V   L + LDDQ   R +
Subjt:  KRKKKSLSILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGN

Query:  HRDLGLTVLDSKLDGNSETLPFLGSLLGN
        H DL L VLD +LDG++E LP LG LLG+
Subjt:  HRDLGLTVLDSKLDGNSETLPFLGSLLGN

A0A7C8Z7W9 Uncharacterized protein5.5e-3256.49Show/hide
Query:  ILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGLTV
        I+RN N+ ISN  LQ+LRVL ++ TP R+ S ENLL+ + ++L HR G HNP +LN+I+KRD++ VLDVLGLL ++  L E LD+Q    G+  DL LTV
Subjt:  ILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGLTV

Query:  LDSKLDGNSETLPFLGSLLGNVFSDLLWGET
        L+SKL+G++E LP LGSLLG+VF+DLL  ET
Subjt:  LDSKLDGNSETLPFLGSLLGNVFSDLLWGET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAAAACAAAAAGAAAAAAAAAATCACTCTCAATCCTGAGGAATTTCAACATCCCCATCAGTAATTTCCTGCTGCAAATCCTTCGGGTCCTTACCATCGACCGTAC
ACCCAACAGAAACGCAAGTACCGAGAATCTCCTTAACGGATCCACTGAGATCCTTAGCCATAGACCTGGGGCGCATAACCCTAGCAATCTCAATAACATCGTCAAGCGAG
ATATTACCATTGTGCTTGATGTTCTTGGTCTTCTTGCGGTCGCGTTCGGGCTCTTTGAGGGCCTTGATGACCAAAGCAGCAGCAGAGGGAACCACAGAGACCTTGGCTTG
ACGGTTCTGGACAGTAAGCTTGACGGTAACTCTGAGACCCTTCCATTCCTTGGCAGTCTCCTTGGCAATGTCTTCTCCGATCTTCTTTGGGGAGAGACCTAG
mRNA sequenceShow/hide mRNA sequence
GAAAGAAAAATGTATCCCCTGCATTCAGTGTAATGTAAGTAAGGAATAATCATAAAAGGGCTATTCTCAATAATACAACCGGAAATGCAACGATATGAATCGAAACAAAA
AATCTAAAACTTGAGTTCAAAACGGAACCACAATGCTTCCATCTCCGAAATGAAGCAAGCTTTTCCACATTAAATAAATCCTTATATCCGGAGATATAGTCATTTGAAGA
CAATAAAAAGAAACATCTTTAAAACTCCAAAACTGAAACTACAAAGTAAGAGTTCAAATGCGAAAAACAAAAAGAAAAAAAAAATCACTCTCAATCCTGAGGAATTTCAA
CATCCCCATCAGTAATTTCCTGCTGCAAATCCTTCGGGTCCTTACCATCGACCGTACACCCAACAGAAACGCAAGTACCGAGAATCTCCTTAACGGATCCACTGAGATCC
TTAGCCATAGACCTGGGGCGCATAACCCTAGCAATCTCAATAACATCGTCAAGCGAGATATTACCATTGTGCTTGATGTTCTTGGTCTTCTTGCGGTCGCGTTCGGGCTC
TTTGAGGGCCTTGATGACCAAAGCAGCAGCAGAGGGAACCACAGAGACCTTGGCTTGACGGTTCTGGACAGTAAGCTTGACGGTAACTCTGAGACCCTTCCATTCCTTGG
CAGTCTCCTTGGCAATGTCTTCTCCGATCTTCTTTGGGGAGAGACCTAGAGGACCGATTTTGGGAGCGAGAGAACTGGCGGCTCCGACCTCACCTCCGGTAACTCGGACG
AAAACCTCGACGACCTGAGAAGGATCGAGCTTGGGCGGCATAATTGAATAATGGGATTAGTTGGATTGAAGTTCTGAGTTCAGAGGCGATGGGCGGAGGCGGAAATCGAA
GGGAAGGGTAAGGTTTTGAAGGAACGTATAAAAGCTAGGGTTTTACTCCTTCTCAAGCGCCTGCCAAATTACTCATTTCTCCTTTTTCTTCCACATTTTCATTCCCTTTT
GGGCTTTTTTTTGGC
Protein sequenceShow/hide protein sequence
MRKTKRKKKSLSILRNFNIPISNFLLQILRVLTIDRTPNRNASTENLLNGSTEILSHRPGAHNPSNLNNIVKRDITIVLDVLGLLAVAFGLFEGLDDQSSSRGNHRDLGL
TVLDSKLDGNSETLPFLGSLLGNVFSDLLWGET