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CSPI06G24820 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G24820
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L23
Genome locationChr6:22128870..22130770
RNA-Seq ExpressionCSPI06G24820
SyntenyCSPI06G24820
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016311 - dephosphorylation (biological process)
GO:0034968 - histone lysine methylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003993 - acid phosphatase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0018024 - histone-lysine N-methyltransferase activity (molecular function)
GO:0070180 - large ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000218 - Ribosomal protein L14P
IPR036853 - Ribosomal protein L14 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABY56104.1 ribosomal protein [Cucumis sativus]1.8e-1587.5Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

KAE8647408.1 hypothetical protein Csa_003717 [Cucumis sativus]2.8e-2190Show/hide
Query:  SEKEMIGRKPFLDFAAMVGGCAYGFFWELTRFEVGRHGEEERPQLSIMSSQMAYSRNIIC
        SEKEMIGRKPFLDFAAMVGGCAYGFFWELTRFEVGRHGEEERPQLSIMSSQM    N+ C
Subjt:  SEKEMIGRKPFLDFAAMVGGCAYGFFWELTRFEVGRHGEEERPQLSIMSSQMAYSRNIIC

KAE8647409.1 hypothetical protein Csa_004093, partial [Cucumis sativus]1.1e-4170.77Show/hide
Query:  MCRFYLSRDCISCIDVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAITWGFQLERNVMIFGPELSEKEMIGRKPFLDFAAMVGGCA
        MCR YLSRDCISCID RKKVLPAVIA+QSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT GFQLER V+IFGPEL                      
Subjt:  MCRFYLSRDCISCIDVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAITWGFQLERNVMIFGPELSEKEMIGRKPFLDFAAMVGGCA

Query:  YGFFWELTRFEVGRHGEEERPQLSIMSSQM
                 F VGRHGEEERPQLSIMSSQM
Subjt:  YGFFWELTRFEVGRHGEEERPQLSIMSSQM

KAG6764590.1 hypothetical protein POTOM_032066 [Populus tomentosa]3.2e-1762.03Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGS----AITWGFQLERNVMIFGPELSEKEMIGRKPF
        D+RKKV+PAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEMKG+          QLER+V+IFG  L  + M+  K F
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGS----AITWGFQLERNVMIFGPELSEKEMIGRKPF

RXH78411.1 hypothetical protein DVH24_001929 [Malus domestica]1.8e-1587.5Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

TrEMBL top hitse value%identityAlignment
A0A087GMF1 Uncharacterized protein8.6e-1687.5Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

A0A0D3FBZ8 GST C-terminal domain-containing protein3.0e-1648.98Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAITWGFQLERNVMIFGPELSEKEMIGRKPFLDFAAMVGGCAYGFFWELTRFEV
        D+RKKV+PAVI +Q  PW RKDGV+MYFEDNAGVIVNPKGEMKGSAIT     + + +    +L E     R+         G  +    W+  R EV
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAITWGFQLERNVMIFGPELSEKEMIGRKPFLDFAAMVGGCAYGFFWELTRFEV

A0A565AKM8 Uncharacterized protein8.6e-1687.5Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

A0A6J1HWG1 60S ribosomal protein L238.6e-1687.5Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

M5WP13 Uncharacterized protein8.6e-1687.5Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

SwissProt top hitse value%identityAlignment
P0CT60 60S ribosomal protein L23-A3.7e-1672.92Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKK++PA++ +Q   W RKDGV++YFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

P0CT61 60S ribosomal protein L23-B3.7e-1672.92Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKK++PA++ +Q   W RKDGV++YFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

P49690 60S ribosomal protein L232.3e-1887.5Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

Q07760 60S ribosomal protein L234.4e-1781.25Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKV+PAV+ +Q  PW RKDGVFMYFEDNAGVIVN KGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

Q9XEK8 60S ribosomal protein L231.3e-1681.25Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKV+PAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEM  SAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

Arabidopsis top hitse value%identityAlignment
AT1G04480.1 Ribosomal protein L14p/L23e family protein1.7e-1987.5Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

AT2G33370.1 Ribosomal protein L14p/L23e family protein1.7e-1987.5Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

AT3G04400.1 Ribosomal protein L14p/L23e family protein1.7e-1987.5Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

AT3G04400.2 Ribosomal protein L14p/L23e family protein1.7e-1987.5Show/hide
Query:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI +Q  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTCGACGACGTTCGGTGGGGTGTCCTCTGGCTACATTCCGATCGAAAAGCTCACCTTCCTCACAAACCTCCACAACCAGATGAACATTATCGTTACCTTGTAAG
CAAATTTGACAATGTAGCGAACTCTCGCCTTACATCATCTATATCCACCGCACTTCCTTCCTCTTCGACATCGATGTACAAGCCAAAGCCCCTTTCGTCTATCTATCACG
AATCCCTAAGTGAAGCCGGCGAGAAAACGCGGGTCGTGATCCCTAACTCTCCATGGCCTAGTTCAAGTCTGCGTCCGGTGATTGAGCGAAACCCTAAGTGGAGCCGGCGA
GGAAATGTGGGGTCGGTTGTGAAGAAAAGAAGGGTCATGTGCCGATTCTATCTATCTCGAGATTGCATCAGTTGCATTGACGTTAGGAAGAAGGTGCTACCTGCTGTTAT
TGCTAAGCAAAGCAACCCATGGCACCGAAAGGATGGTGTCTTCATGTACTTCGAAGACAATGCTGGTGTCATCGTAAACCCCAAAGGAGAGATGAAGGGTTCTGCTATTA
CATGGGGGTTCCAATTGGAAAGGAATGTGATGATCTTTGGCCCAGAATTATCAGAAAAGGAAATGATTGGGAGAAAACCATTTCTCGACTTTGCAGCGATGGTTGGGGGT
TGTGCATATGGATTCTTTTGGGAATTAACAAGATTCGAAGTTGGAAGGCATGGGGAGGAGGAGAGACCTCAACTCTCAATTATGAGTTCTCAAATGGCTTACTCACGAAA
CATCATCTGTGAAAGCCCAACACGAGTTTTTGGACAAAACTTCCGGTCTTCCTTTACATTTCCGTTGGCAACTTGGCATTATGAAATGGATTCATCGAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCTCGACGACGTTCGGTGGGGTGTCCTCTGGCTACATTCCGATCGAAAAGCTCACCTTCCTCACAAACCTCCACAACCAGATGAACATTATCGTTACCTTGTAAG
CAAATTTGACAATGTAGCGAACTCTCGCCTTACATCATCTATATCCACCGCACTTCCTTCCTCTTCGACATCGATGTACAAGCCAAAGCCCCTTTCGTCTATCTATCACG
AATCCCTAAGTGAAGCCGGCGAGAAAACGCGGGTCGTGATCCCTAACTCTCCATGGCCTAGTTCAAGTCTGCGTCCGGTGATTGAGCGAAACCCTAAGTGGAGCCGGCGA
GGAAATGTGGGGTCGGTTGTGAAGAAAAGAAGGGTCATGTGCCGATTCTATCTATCTCGAGATTGCATCAGTTGCATTGACGTTAGGAAGAAGGTGCTACCTGCTGTTAT
TGCTAAGCAAAGCAACCCATGGCACCGAAAGGATGGTGTCTTCATGTACTTCGAAGACAATGCTGGTGTCATCGTAAACCCCAAAGGAGAGATGAAGGGTTCTGCTATTA
CATGGGGGTTCCAATTGGAAAGGAATGTGATGATCTTTGGCCCAGAATTATCAGAAAAGGAAATGATTGGGAGAAAACCATTTCTCGACTTTGCAGCGATGGTTGGGGGT
TGTGCATATGGATTCTTTTGGGAATTAACAAGATTCGAAGTTGGAAGGCATGGGGAGGAGGAGAGACCTCAACTCTCAATTATGAGTTCTCAAATGGCTTACTCACGAAA
CATCATCTGTGAAAGCCCAACACGAGTTTTTGGACAAAACTTCCGGTCTTCCTTTACATTTCCGTTGGCAACTTGGCATTATGAAATGGATTCATCGAGGTGA
Protein sequenceShow/hide protein sequence
MVLDDVRWGVLWLHSDRKAHLPHKPPQPDEHYRYLVSKFDNVANSRLTSSISTALPSSSTSMYKPKPLSSIYHESLSEAGEKTRVVIPNSPWPSSSLRPVIERNPKWSRR
GNVGSVVKKRRVMCRFYLSRDCISCIDVRKKVLPAVIAKQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAITWGFQLERNVMIFGPELSEKEMIGRKPFLDFAAMVGG
CAYGFFWELTRFEVGRHGEEERPQLSIMSSQMAYSRNIICESPTRVFGQNFRSSFTFPLATWHYEMDSSR