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CSPI06G24830 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G24830
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L23
Genome locationChr6:22135672..22135908
RNA-Seq ExpressionCSPI06G24830
SyntenyCSPI06G24830
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016311 - dephosphorylation (biological process)
GO:0034968 - histone lysine methylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003993 - acid phosphatase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0018024 - histone-lysine N-methyltransferase activity (molecular function)
GO:0070180 - large ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000218 - Ribosomal protein L14P
IPR036853 - Ribosomal protein L14 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABY56104.1 ribosomal protein [Cucumis sativus]8.2e-1687.76Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKVLPAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

GAQ91304.1 60s ribosomal protein L23 [Klebsormidium nitens]3.7e-1679.31Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG--GFQLERK
        D RKKV+PAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG  G  LE K
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG--GFQLERK

KAE8647409.1 hypothetical protein Csa_004093, partial [Cucumis sativus]2.2e-3798.72Show/hide
Query:  MCRLYLSRDCISCIDARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITGGFQLERKVLIFGPEL
        MCRLYLSRDCISCIDARKKVLPAVIARQSNPWHRKDGVFMYFEDNAG IVNPKGEMKGSAITGGFQLERKVLIFGPEL
Subjt:  MCRLYLSRDCISCIDARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITGGFQLERKVLIFGPEL

RXH78411.1 hypothetical protein DVH24_001929 [Malus domestica]8.2e-1687.76Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKVLPAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

XP_009334207.1 PREDICTED: 60S ribosomal protein L23-like [Pyrus x bretschneideri]8.2e-1687.76Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKVLPAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

TrEMBL top hitse value%identityAlignment
A0A087GMF1 Uncharacterized protein4.0e-1687.76Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKVLPAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

A0A1Y1IKK8 60s ribosomal protein L231.8e-1679.31Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG--GFQLERK
        D RKKV+PAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG  G  LE K
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG--GFQLERK

A0A565AKM8 Uncharacterized protein4.0e-1687.76Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKVLPAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

A0A6J1HWG1 60S ribosomal protein L234.0e-1687.76Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKVLPAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

M5WP13 Uncharacterized protein4.0e-1687.76Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKVLPAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

SwissProt top hitse value%identityAlignment
P0CT60 60S ribosomal protein L23-A1.7e-1673.47Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKK++PA++ RQ   W RKDGV++YFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

P0CT61 60S ribosomal protein L23-B1.7e-1673.47Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKK++PA++ RQ   W RKDGV++YFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

P49690 60S ribosomal protein L231.1e-1887.76Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKVLPAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

Q07760 60S ribosomal protein L232.0e-1781.63Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKV+PAV+ RQ  PW RKDGVFMYFEDNAG IVN KGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

Q9XEK8 60S ribosomal protein L235.9e-1781.63Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKV+PAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEM  SAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

Arabidopsis top hitse value%identityAlignment
AT1G04480.1 Ribosomal protein L14p/L23e family protein7.7e-2087.76Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKVLPAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

AT2G33370.1 Ribosomal protein L14p/L23e family protein7.7e-2087.76Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKVLPAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

AT3G04400.1 Ribosomal protein L14p/L23e family protein7.7e-2087.76Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKVLPAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

AT3G04400.2 Ribosomal protein L14p/L23e family protein7.7e-2087.76Show/hide
Query:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG
        D RKKVLPAVI RQ  PW RKDGVFMYFEDNAG IVNPKGEMKGSAITG
Subjt:  DARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITG

ATCG00780.1 ribosomal protein L143.5e-0431.03Show/hide
Query:  RKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITGGFQLERKVLIF
        R +V+ AVI R      R +G  + ++DNA  +++ +G  KG+ + G    E + L F
Subjt:  RKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITGGFQLERKVLIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCGCTTGTATCTATCTCGAGATTGCATCAGTTGCATTGACGCCAGGAAGAAGGTGCTACCTGCTGTTATTGCTAGGCAGAGCAACCCATGGCACCGAAAGGATGG
TGTCTTCATGTACTTCGAAGACAATGCTGGTGGCATCGTAAACCCCAAAGGAGAGATGAAGGGTTCTGCTATTACAGGGGGGTTCCAATTGGAAAGGAAGGTGCTGATCT
TTGGCCCAGAATTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCGCTTGTATCTATCTCGAGATTGCATCAGTTGCATTGACGCCAGGAAGAAGGTGCTACCTGCTGTTATTGCTAGGCAGAGCAACCCATGGCACCGAAAGGATGG
TGTCTTCATGTACTTCGAAGACAATGCTGGTGGCATCGTAAACCCCAAAGGAGAGATGAAGGGTTCTGCTATTACAGGGGGGTTCCAATTGGAAAGGAAGGTGCTGATCT
TTGGCCCAGAATTGTAA
Protein sequenceShow/hide protein sequence
MCRLYLSRDCISCIDARKKVLPAVIARQSNPWHRKDGVFMYFEDNAGGIVNPKGEMKGSAITGGFQLERKVLIFGPEL