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CSPI06G24930 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G24930
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRNase H domain-containing protein
Genome locationChr6:22218295..22218594
RNA-Seq ExpressionCSPI06G24930
SyntenyCSPI06G24930
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER45429.1 UDP-Glycosyltransferase superfamily protein [Striga asiatica]6.1e-0850.56Show/hide
Query:  SWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVVVSWLPVPVKAPGQI
        S+PP    VNSTR AGG A A  HSTWP PQSA+ Q N    + E   RAQNLPDHG A+    V    + KP V    P PV+  GQI
Subjt:  SWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVVVSWLPVPVKAPGQI

KAB5520191.1 hypothetical protein DKX38_024510 [Salix brachista]7.2e-0948.45Show/hide
Query:  PPLGAI----VNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVV-VSWLPVPVKAPGQIGKGQL
        PP G I    VNS + AGGIA APLHS  P  QSAVAQ NFP  SVE  V AQ  P H    ++    P +N KPV   +  P  V+ PGQ   G L
Subjt:  PPLGAI----VNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVV-VSWLPVPVKAPGQIGKGQL

KAF4370948.1 hypothetical protein F8388_002841 [Cannabis sativa]4.2e-0947.42Show/hide
Query:  KSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLP-DHGGAVVTVVVDPGSNWKPVVVSW-LPVPVKAPGQIGKGQL
        KS PP  + V+STR+ GG   APLHST P P S +A  N P   VEQR R Q  P      + T  + PG+N KPVV SW    PV+  GQ+G  QL
Subjt:  KSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLP-DHGGAVVTVVVDPGSNWKPVVVSW-LPVPVKAPGQIGKGQL

KAF9682190.1 hypothetical protein SADUNF_Sadunf05G0082900 [Salix dunnii]9.5e-0947.83Show/hide
Query:  LGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVVVSW-LPVPVKAPGQIGKGQLL
        +G +VNS ++AGG+A APLHSTWP PQSAVAQE +P  S  Q VR Q  PD           P  + KPV+ S+ LP   + PGQ  +  LL
Subjt:  LGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVVVSW-LPVPVKAPGQIGKGQLL

KAF9867878.1 hypothetical protein H0E87_026561 [Populus deltoides]1.2e-0850.57Show/hide
Query:  VNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVV-VSWLPVPVKAPGQIGKGQL
        VNS   AGGIA APLHS  P  QSAVAQ NFP  SVE  V A   PDH    ++    P +N KPV  +   P  V+ PGQ   GQL
Subjt:  VNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVV-VSWLPVPVKAPGQIGKGQL

TrEMBL top hitse value%identityAlignment
A0A0A9LR02 Uncharacterized protein3.5e-0950Show/hide
Query:  SKKSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPF-GSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVVVSW-LPVPVKAPG
        SKKS PP  + VNS  +AGG A APLH T P PQS VAQ + P   SV Q VRA   PDH     TV   P ++  PVV S  +P P  +PG
Subjt:  SKKSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPF-GSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVVVSW-LPVPVKAPG

A0A0A9NYD1 Uncharacterized protein7.8e-0948.91Show/hide
Query:  SKKSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPF-GSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVVVSW-LPVPVKAPG
        SKKS PP  + VNS  +AGG A  PLH T P PQSAV Q + P   SV Q VRA   PDH     TV   P ++  PVV S  +P P  +PG
Subjt:  SKKSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPF-GSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVVVSW-LPVPVKAPG

A0A5N5JLH5 Uncharacterized protein3.5e-0948.45Show/hide
Query:  PPLGAI----VNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVV-VSWLPVPVKAPGQIGKGQL
        PP G I    VNS + AGGIA APLHS  P  QSAVAQ NFP  SVE  V AQ  P H    ++    P +N KPV   +  P  V+ PGQ   G L
Subjt:  PPLGAI----VNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVV-VSWLPVPVKAPGQIGKGQL

A0A6N2MKD6 Uncharacterized protein7.1e-1050.52Show/hide
Query:  PPLGAI----VNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVV-VSWLPVPVKAPGQIGKGQL
        PP G I    VNS + AGGIA APLHS  P  QSAVAQ NFP  SVE  V AQ  P H    +     P +N KPV   + LP  V+APGQ   G L
Subjt:  PPLGAI----VNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVV-VSWLPVPVKAPGQIGKGQL

A0A7J6FJX9 RNase H domain-containing protein2.1e-0947.42Show/hide
Query:  KSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLP-DHGGAVVTVVVDPGSNWKPVVVSW-LPVPVKAPGQIGKGQL
        KS PP  + V+STR+ GG   APLHST P P S +A  N P   VEQR R Q  P      + T  + PG+N KPVV SW    PV+  GQ+G  QL
Subjt:  KSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLP-DHGGAVVTVVVDPGSNWKPVVVSW-LPVPVKAPGQIGKGQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAAAAAATCTTGGCCGCCATTGGGTGCTATCGTGAATTCAACGAGACTAGCTGGCGGAATTGCGGCGGCGCCGTTGCACTCGACTTGGCCAATGCCGCAATCGGC
GGTTGCGCAAGAGAATTTTCCATTTGGATCTGTGGAACAGAGAGTTCGAGCCCAGAATCTGCCGGACCATGGGGGAGCAGTCGTTACCGTGGTTGTTGATCCGGGGAGTA
ATTGGAAGCCAGTGGTTGTTAGTTGGTTGCCGGTGCCGGTTAAAGCTCCCGGCCAAATTGGGAAGGGACAGTTATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAAAAAATCTTGGCCGCCATTGGGTGCTATCGTGAATTCAACGAGACTAGCTGGCGGAATTGCGGCGGCGCCGTTGCACTCGACTTGGCCAATGCCGCAATCGGC
GGTTGCGCAAGAGAATTTTCCATTTGGATCTGTGGAACAGAGAGTTCGAGCCCAGAATCTGCCGGACCATGGGGGAGCAGTCGTTACCGTGGTTGTTGATCCGGGGAGTA
ATTGGAAGCCAGTGGTTGTTAGTTGGTTGCCGGTGCCGGTTAAAGCTCCCGGCCAAATTGGGAAGGGACAGTTATTATGA
Protein sequenceShow/hide protein sequence
MSKKSWPPLGAIVNSTRLAGGIAAAPLHSTWPMPQSAVAQENFPFGSVEQRVRAQNLPDHGGAVVTVVVDPGSNWKPVVVSWLPVPVKAPGQIGKGQLL