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CSPI06G25070 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G25070
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionBeta-galactosidase
Genome locationChr6:22337657..22338135
RNA-Seq ExpressionCSPI06G25070
SyntenyCSPI06G25070
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0005773 - vacuole (cellular component)
GO:0048046 - apoplast (cellular component)
GO:0004565 - beta-galactosidase activity (molecular function)
GO:0030246 - carbohydrate binding (molecular function)
InterPro domainsIPR001944 - Glycoside hydrolase, family 35
IPR017853 - Glycoside hydrolase superfamily
IPR031330 - Glycoside hydrolase 35, catalytic domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN48220.1 hypothetical protein Csa_003787 [Cucumis sativus]3.8e-5398.04Show/hide
Query:  MRTAEDVAIGRFFQYGGSMQNYYMYHGGTNFGRTSGLFENYIDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL
        MRTAEDVAIGRFFQYGGSMQNYYMYHGGTNFGRTSGLFENY DIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNP GNCDNFQKGTCDSSTAL
Subjt:  MRTAEDVAIGRFFQYGGSMQNYYMYHGGTNFGRTSGLFENYIDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL

Query:  CH
        CH
Subjt:  CH

TYK07364.1 beta-galactosidase-like [Cucumis melo var. makuwa]6.7e-2685.71Show/hide
Query:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL
        LFE +      IDIQITRVKKVCAKPYAGSTLELSCHDRTIK+I+FVSFGNPHGNCDNFQKGTCDSSTAL
Subjt:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL

XP_016902878.1 PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis melo]6.7e-2685.71Show/hide
Query:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL
        LFE +      IDIQITRVKKVCAKPYAGSTLELSCHDRTIK+I+FVSFGNPHGNCDNFQKGTCDSSTAL
Subjt:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL

XP_016902878.1 PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis melo]5.7e-0986.84Show/hide
Query:  MRTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG
        MRTAEDVA  + RFFQYGGS+QNYYMYHGGTNFGRTSG
Subjt:  MRTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG

XP_016902878.1 PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis melo]6.7e-2685.71Show/hide
Query:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL
        LFE +      IDIQITRVKKVCAKPYAGSTLELSCHDRTIK+I+FVSFGNPHGNCDNFQKGTCDSSTAL
Subjt:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL

XP_038882297.1 beta-galactosidase 15-like [Benincasa hispida]4.1e-2381.16Show/hide
Query:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTA
        LFE +      IDIQ TRVKKVCAKPYAGSTLELSCHDRTIK+I+FVSFGNP G CDNFQKGTCDSSTA
Subjt:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTA

XP_038882297.1 beta-galactosidase 15-like [Benincasa hispida]1.2e-0989.47Show/hide
Query:  MRTAEDV--AIGRFFQYGGSMQNYYMYHGGTNFGRTSG
        +RTAEDV  A+GRFFQYGGSMQNYYMYHGGTNFGRTSG
Subjt:  MRTAEDV--AIGRFFQYGGSMQNYYMYHGGTNFGRTSG

TrEMBL top hitse value%identityAlignment
A0A0A0KET4 Beta-galactosidase1.8e-5398.04Show/hide
Query:  MRTAEDVAIGRFFQYGGSMQNYYMYHGGTNFGRTSGLFENYIDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL
        MRTAEDVAIGRFFQYGGSMQNYYMYHGGTNFGRTSGLFENY DIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNP GNCDNFQKGTCDSSTAL
Subjt:  MRTAEDVAIGRFFQYGGSMQNYYMYHGGTNFGRTSGLFENYIDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL

Query:  CH
        CH
Subjt:  CH

A0A1S4E3S3 Beta-galactosidase3.3e-2685.71Show/hide
Query:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL
        LFE +      IDIQITRVKKVCAKPYAGSTLELSCHDRTIK+I+FVSFGNPHGNCDNFQKGTCDSSTAL
Subjt:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL

A0A1S4E3S3 Beta-galactosidase2.8e-0986.84Show/hide
Query:  MRTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG
        MRTAEDVA  + RFFQYGGS+QNYYMYHGGTNFGRTSG
Subjt:  MRTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG

A0A1S4E3S3 Beta-galactosidase5.7e-2370.24Show/hide
Query:  YMYHGGTNFGRTSGLFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL
        Y+  GG N   T  LFE +      IDIQ TRVKKVCA PYAGSTLELSCHDRTI DI FVSFGNPHG CD+FQKG+C+SSTAL
Subjt:  YMYHGGTNFGRTSGLFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL

A0A5A7SI46 Beta-galactosidase-like3.3e-2685.71Show/hide
Query:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL
        LFE +      IDIQITRVKKVCAKPYAGSTLELSCHDRTIK+I+FVSFGNPHGNCDNFQKGTCDSSTAL
Subjt:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL

A0A5D3C7Z1 Beta-galactosidase-like3.3e-2685.71Show/hide
Query:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL
        LFE +      IDIQITRVKKVCAKPYAGSTLELSCHDRTIK+I+FVSFGNPHGNCDNFQKGTCDSSTAL
Subjt:  LFENY------IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL

SwissProt top hitse value%identityAlignment
P49676 Beta-galactosidase2.3e-0872.97Show/hide
Query:  RTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG
        RTAED+A  + RFFQ GG+ QNYYMYHGGTNFGR +G
Subjt:  RTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG

P49676 Beta-galactosidase5.6e-0744.68Show/hide
Query:  KVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSS
        +VCAK +  + +ELSC++R I  + F SFGNP G C +F  G+C+ +
Subjt:  KVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSS

Q7G3T8 Beta-galactosidase 135.0e-0872.97Show/hide
Query:  RTAEDV--AIGRFFQYGGSMQNYYMYHGGTNFGRTSG
        R+AED+  A+  FFQ  GS+QNYYMYHGGTNFGRTSG
Subjt:  RTAEDV--AIGRFFQYGGSMQNYYMYHGGTNFGRTSG

Q9C6W4 Beta-galactosidase 152.0e-0940.48Show/hide
Query:  YHGGTNFGRTSG-----LFE------NYIDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSS
        YH   +F  + G     LFE      + ++ Q   V  VCA  Y  + LELSC+ + I  I F SFGNP G+C +F+KGTC++S
Subjt:  YHGGTNFGRTSG-----LFE------NYIDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSS

Q9C6W4 Beta-galactosidase 154.3e-0770.27Show/hide
Query:  RTAEDV--AIGRFFQYGGSMQNYYMYHGGTNFGRTSG
        RT EDV  A+ RFFQ  G+ QNYYMYHGGTNF RT+G
Subjt:  RTAEDV--AIGRFFQYGGSMQNYYMYHGGTNFGRTSG

Q9FN08 Beta-galactosidase 105.0e-0875.68Show/hide
Query:  RTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG
        R AEDVA  + RFF  GGS+ NYYMYHGGTNFGRTSG
Subjt:  RTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG

Q9SCV5 Beta-galactosidase 72.3e-0872.97Show/hide
Query:  RTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG
        RTAED+A  + RFFQ GG+ QNYYMYHGGTNFGR +G
Subjt:  RTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG

Q9SCV5 Beta-galactosidase 78.6e-0838.27Show/hide
Query:  YHGGTNFGRTSG-----LFE------NYIDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTC
        YH   +F   SG     LFE      + ++ +   V  VCA+ +  + +ELSCH+R I  + F SFGNP G+C +F  GTC
Subjt:  YHGGTNFGRTSG-----LFE------NYIDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTC

Arabidopsis top hitse value%identityAlignment
AT1G31740.1 beta-galactosidase 158.5e-1148.21Show/hide
Query:  IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSS
        ++ Q   V  VCA  Y  + LELSC+ + I  I F SFGNP G+C +F+KGTC++S
Subjt:  IDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSS

AT1G31740.1 beta-galactosidase 153.0e-0870.27Show/hide
Query:  RTAEDV--AIGRFFQYGGSMQNYYMYHGGTNFGRTSG
        RT EDV  A+ RFFQ  G+ QNYYMYHGGTNF RT+G
Subjt:  RTAEDV--AIGRFFQYGGSMQNYYMYHGGTNFGRTSG

AT2G32810.1 beta galactosidase 91.0e-0872.97Show/hide
Query:  RTAEDV--AIGRFFQYGGSMQNYYMYHGGTNFGRTSG
        R AED+  A+ RF+Q GGS QNYYMY GGTNFGRTSG
Subjt:  RTAEDV--AIGRFFQYGGSMQNYYMYHGGTNFGRTSG

AT2G32810.1 beta galactosidase 95.9e-0442.5Show/hide
Query:  LELSCHD-RTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL
        + L C D   I  I+F S+G P G+CD F  G C +S +L
Subjt:  LELSCHD-RTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL

AT2G32810.2 beta galactosidase 91.0e-0872.97Show/hide
Query:  RTAEDV--AIGRFFQYGGSMQNYYMYHGGTNFGRTSG
        R AED+  A+ RF+Q GGS QNYYMY GGTNFGRTSG
Subjt:  RTAEDV--AIGRFFQYGGSMQNYYMYHGGTNFGRTSG

AT2G32810.2 beta galactosidase 95.9e-0442.5Show/hide
Query:  LELSCHD-RTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL
        + L C D   I  I+F S+G P G+CD F  G C +S +L
Subjt:  LELSCHD-RTIKDIDFVSFGNPHGNCDNFQKGTCDSSTAL

AT5G20710.1 beta-galactosidase 71.6e-0972.97Show/hide
Query:  RTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG
        RTAED+A  + RFFQ GG+ QNYYMYHGGTNFGR +G
Subjt:  RTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG

AT5G20710.1 beta-galactosidase 76.1e-0938.27Show/hide
Query:  YHGGTNFGRTSG-----LFE------NYIDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTC
        YH   +F   SG     LFE      + ++ +   V  VCA+ +  + +ELSCH+R I  + F SFGNP G+C +F  GTC
Subjt:  YHGGTNFGRTSG-----LFE------NYIDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTC

AT5G63810.1 beta-galactosidase 103.6e-0975.68Show/hide
Query:  RTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG
        R AEDVA  + RFF  GGS+ NYYMYHGGTNFGRTSG
Subjt:  RTAEDVA--IGRFFQYGGSMQNYYMYHGGTNFGRTSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAACAGCTGAGGATGTAGCAATTGGTCGTTTCTTCCAATATGGTGGTTCCATGCAGAATTACTATATGTATCATGGTGGGACAAACTTTGGTAGAACTTCGGGATT
GTTTGAAAATTACATAGATATCCAGATAACAAGAGTGAAAAAAGTGTGTGCAAAGCCTTATGCAGGAAGCACATTGGAGCTATCATGCCATGATCGAACCATCAAAGACA
TCGATTTTGTGAGCTTTGGGAATCCTCATGGCAATTGTGACAATTTCCAGAAGGGTACCTGTGATTCTTCCACTGCCCTCTGTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAACAGCTGAGGATGTAGCAATTGGTCGTTTCTTCCAATATGGTGGTTCCATGCAGAATTACTATATGTATCATGGTGGGACAAACTTTGGTAGAACTTCGGGATT
GTTTGAAAATTACATAGATATCCAGATAACAAGAGTGAAAAAAGTGTGTGCAAAGCCTTATGCAGGAAGCACATTGGAGCTATCATGCCATGATCGAACCATCAAAGACA
TCGATTTTGTGAGCTTTGGGAATCCTCATGGCAATTGTGACAATTTCCAGAAGGGTACCTGTGATTCTTCCACTGCCCTCTGTCATTGA
Protein sequenceShow/hide protein sequence
MRTAEDVAIGRFFQYGGSMQNYYMYHGGTNFGRTSGLFENYIDIQITRVKKVCAKPYAGSTLELSCHDRTIKDIDFVSFGNPHGNCDNFQKGTCDSSTALCH