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CSPI06G25270 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G25270
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRAB6-interacting golgin
Genome locationChr6:22519702..22521513
RNA-Seq ExpressionCSPI06G25270
SyntenyCSPI06G25270
Gene Ontology termsGO:0005794 - Golgi apparatus (cellular component)
InterPro domainsIPR007033 - RAB6-interacting golgin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025281.1 putative DNA double-strand break repair Rad50 ATPase isoform X2 [Cucumis melo var. makuwa]1.4e-7093.33Show/hide
Query:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ+DQNPPQQLQ MLENS NLSFSSKEDDEMSKSALAAFREKEEEIDRMRTEL+NKLQ+RLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLG      EKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

XP_004143305.1 uncharacterized protein LOC101209289 [Cucumis sativus]1.9e-78100Show/hide
Query:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

XP_008462544.1 PREDICTED: uncharacterized protein LOC103500877 [Cucumis melo]3.0e-7696.97Show/hide
Query:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ+DQNPPQQLQ MLENS NLSFSSKEDDEMSKSALAAFREKEEEIDRMRTEL+NKLQ+RLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

XP_023543803.1 uncharacterized protein LOC111803564 [Cucurbita pepo subsp. pepo]2.9e-6383.03Show/hide
Query:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ++QN PQQLQ ML+NS NLSFSSKED+EMSKSAL+AFREKEEEI+RMRTEL  KLQ RLGRV+EESRRL+S+REELE I GDP RKEIGQIRK+ID L
Subjt:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLG  CQKKEKEYKDALD+FNEKNNEKVQ ISKLMEMVGESE++RLKRLEELSKHVDN +
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

XP_038882826.1 uncharacterized protein LOC120073968 isoform X1 [Benincasa hispida]5.0e-7191.52Show/hide
Query:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQSDQN PQQLQAML+NSA+LSFSSKEDD+MSKSALAAFREKEEEIDRMR +L+NKLQ+RLGRVQEESRRL+S+REEL+AI GDPMRKEIGQIRKKIDAL
Subjt:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLG+TCQKKEKEYKDALD+FNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

TrEMBL top hitse value%identityAlignment
A0A0A0KHE9 RAB6-interacting golgin9.1e-79100Show/hide
Query:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

A0A1S3CIS0 RAB6-interacting golgin1.5e-7696.97Show/hide
Query:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ+DQNPPQQLQ MLENS NLSFSSKEDDEMSKSALAAFREKEEEIDRMRTEL+NKLQ+RLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

A0A5A7SM04 RAB6-interacting golgin7.0e-7193.33Show/hide
Query:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ+DQNPPQQLQ MLENS NLSFSSKEDDEMSKSALAAFREKEEEIDRMRTEL+NKLQ+RLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
Subjt:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLG      EKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

A0A6J1EJF7 RAB6-interacting golgin9.1e-6382.42Show/hide
Query:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ++QN PQQLQ ML+NS NLSFSSKED+EMSKSAL+AFREKEEEI+RMRTEL  KLQ RLGRV+EESRRL+S+REELE I GDP RKEIGQIRK+ID L
Subjt:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        NKELKPLG  CQKKEKEYKDALD+FNEKNNEKV  ISKLMEMVGESE++RLKRLEELSKHVDN +
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS

A0A6J1IS07 RAB6-interacting golgin2.4e-6384.05Show/hide
Query:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL
        MQ++QN PQQLQ ML+NS NLSFSSKED+EMSKSAL+AFREKEEEI+RMRTEL  KLQ RLGRV+EESRRL+S+REELE I GDP RKEIGQIRK+ID L
Subjt:  MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDAL

Query:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDN
        NKELKPLG  CQKKEKEYKDALD+FNEKNNEKVQ ISKLMEMVGESE++RLKRLEELSKHVDN
Subjt:  NKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G36410.2 Family of unknown function (DUF662)7.7e-4660.37Show/hide
Query:  QSDQNPPQQLQAMLENSANLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID
        Q    P QQ   M+ ++ +LSFS   S+ED+EM++SAL+AFR KE+EI++ R E+  ++Q +LGRV++E++RLS++REELE++  DPMRKE+  +RKKID
Subjt:  QSDQNPPQQLQAMLENSANLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID

Query:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVD
        ++NKELKPLG T QKKE+EYK+ALD+FNEKN EKVQLI+KLME+VGESEKLR+ +LEELSK ++
Subjt:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVD

AT2G36410.3 Family of unknown function (DUF662)1.1e-4459.76Show/hide
Query:  QSDQNPPQQLQAMLENSANLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID
        Q    P QQ   M+ ++ +LSFS   S+ED+EM++SAL+AFR KE+EI++ R E+  ++Q +LGRV++E++RLS++REELE++  DPMRKE+  +RKKID
Subjt:  QSDQNPPQQLQAMLENSANLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID

Query:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVD
        ++NKELKPLG T QKK  EYK+ALD+FNEKN EKVQLI+KLME+VGESEKLR+ +LEELSK ++
Subjt:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVD

AT3G09980.1 Family of unknown function (DUF662)2.9e-4561.54Show/hide
Query:  QQLQAMLENSANLSFS-SKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPL
        +QL A L  S + S   SKED+EMS++AL+AFR KEEEI++ + E+  ++Q +LGRV+EE++RL+ +REELE +  DPMRKE+  +RKKID++NKELKPL
Subjt:  QQLQAMLENSANLSFS-SKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPL

Query:  GVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDN
        G T QKKE+EYK+AL++FNEKN EKVQLI++LME+VGESEK+R+K+LEELSK++D+
Subjt:  GVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDN

AT3G52920.1 Family of unknown function (DUF662)1.1e-4460Show/hide
Query:  QSDQNPPQQLQAMLENSANLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID
        ++   PPQQ+        +LSFS   SKED+EM++SAL+AFR KE+EI++ + E+  +++ +LGRV+EE+RRL+S+REELE +  DPMRKE+  +RKKID
Subjt:  QSDQNPPQQLQAMLENSANLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID

Query:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEM---VGESEKLRLKRLEELSKHVDNTS
        ++NKELKPLG T QKKE+EYK+ALD+FNEKN EKVQLI+KLMEM   VGESEKLRLK+L+ELS+ +D  S
Subjt:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEM---VGESEKLRLKRLEELSKHVDNTS

AT3G52920.2 Family of unknown function (DUF662)5.9e-4660.48Show/hide
Query:  QSDQNPPQQLQAMLENSANLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID
        ++   PPQQ+        +LSFS   SKED+EM++SAL+AFR KE+EI++ + E+  +++ +LGRV+EE+RRL+S+REELE +  DPMRKE+  +RKKID
Subjt:  QSDQNPPQQLQAMLENSANLSFS---SKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKID

Query:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS
        ++NKELKPLG T QKKE+EYK+ALD+FNEKN EKVQLI+KLME+VGESEKLRLK+L+ELS+ +D  S
Subjt:  ALNKELKPLGVTCQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAGCGACCAGAATCCACCCCAGCAACTTCAAGCAATGTTAGAGAATTCTGCAAATTTGAGTTTCAGTAGTAAAGAAGACGATGAGATGTCCAAATCCGCGCTTGC
GGCTTTCAGGGAAAAGGAAGAGGAGATCGATCGGATGAGGACTGAGCTTAACAACAAACTTCAACTTCGTCTCGGCCGTGTTCAGGAAGAATCCAGGCGTTTGTCTTCAC
TTCGCGAGGAACTTGAAGCCATAGGAGGAGATCCAATGAGAAAGGAAATTGGACAAATTCGTAAGAAAATTGATGCCCTAAACAAGGAATTGAAGCCTCTTGGAGTAACG
TGCCAAAAGAAGGAGAAAGAGTACAAAGATGCCCTTGATTCTTTCAATGAAAAGAACAACGAAAAAGTACAGTTAATATCAAAACTAATGGAGATGGTTGGTGAAAGTGA
AAAGCTGAGGCTAAAGAGGTTGGAAGAATTGAGTAAGCATGTGGATAACACTTCTTAA
mRNA sequenceShow/hide mRNA sequence
AAAAATATATATTAGAAAAGTGAAAAAATAAAAAATAAAAATAAAAAAAAAGGGGGAGAAAATGATATTATAACCCAATAGAAAAAGAAAGCTAAGAGAGCAATAGCCTA
AGAAAGAAAAAGCAGAGGAAAGGAAACAGCGATTCATTCATTCAGTCATAGAAACAGAAACAAAAGGGGGGCGTTGGTTTCAAGAAAAATCAAAGATCAAGGACGAGAGA
AAGAAAAAGATGCAGAGCGACCAGAATCCACCCCAGCAACTTCAAGCAATGTTAGAGAATTCTGCAAATTTGAGTTTCAGTAGTAAAGAAGACGATGAGATGTCCAAATC
CGCGCTTGCGGCTTTCAGGGAAAAGGAAGAGGAGATCGATCGGATGAGGACTGAGCTTAACAACAAACTTCAACTTCGTCTCGGCCGTGTTCAGGAAGAATCCAGGCGTT
TGTCTTCACTTCGCGAGGAACTTGAAGCCATAGGAGGAGATCCAATGAGAAAGGAAATTGGACAAATTCGTAAGAAAATTGATGCCCTAAACAAGGAATTGAAGCCTCTT
GGAGTAACGTGCCAAAAGAAGGAGAAAGAGTACAAAGATGCCCTTGATTCTTTCAATGAAAAGAACAACGAAAAAGTACAGTTAATATCAAAACTAATGGAGATGGTTGG
TGAAAGTGAAAAGCTGAGGCTAAAGAGGTTGGAAGAATTGAGTAAGCATGTGGATAACACTTCTTAAGTTAATTACTAAATTCAATCAATCAGTTTCTCTTAGTTTCCTT
CGGTTTTATGTTGTTTTCTTTTTTTCTTAAAAAAAATGTTTGTATGGGTGTTTTTAATTTAACCAGGG
Protein sequenceShow/hide protein sequence
MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLRLGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPLGVT
CQKKEKEYKDALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS