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CSPI06G25550 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G25550
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSmall nuclear ribonucleoprotein G
Genome locationChr6:22703883..22705579
RNA-Seq ExpressionCSPI06G25550
SyntenyCSPI06G25550
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0043186 - P granule (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR044641 - Sm-like protein Lsm7/SmG
IPR034098 - Small nuclear ribonucleoprotein G
IPR010920 - LSM domain superfamily
IPR001163 - LSM domain, eukaryotic/archaea-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595179.1 putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subsp. sororia]1.8e-3496.25Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]2.8e-35100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

XP_012468163.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii]1.8e-3497.5Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV RMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

XP_022132404.1 probable small nuclear ribonucleoprotein G [Momordica charantia]1.4e-3498.75Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

XP_023517274.1 probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo]6.2e-3597.5Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

TrEMBL top hitse value%identityAlignment
A0A0A0KHH9 Small nuclear ribonucleoprotein G1.4e-35100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

A0A1S3CHS7 Small nuclear ribonucleoprotein G1.4e-35100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

A0A1U8LJV9 Small nuclear ribonucleoprotein G8.8e-3597.5Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV RMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

A0A5D3C6A2 Small nuclear ribonucleoprotein G1.4e-35100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

A0A6J1BSY9 Small nuclear ribonucleoprotein G6.7e-3598.75Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

SwissProt top hitse value%identityAlignment
O82221 Probable small nuclear ribonucleoprotein G5.0e-3593.59Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR

P24715 Probable small nuclear ribonucleoprotein G3.3e-3188.16Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV
        MS SGQPP LKKYMDK+LQI L ANR+++GTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEPV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV

P62308 Small nuclear ribonucleoprotein G7.9e-1761.97Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

Q3ZBL0 Small nuclear ribonucleoprotein G7.9e-1761.97Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

Q9VXE0 Probable small nuclear ribonucleoprotein G1.2e-1763.38Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV
        PP++KKYMDK++ +KLN  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGNS+V VEAL+ V
Subjt:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV

Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein6.9e-0839.44Show/hide
Query:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G03870.2 Small nuclear ribonucleoprotein family protein6.9e-0839.44Show/hide
Query:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G23930.1 probable small nuclear ribonucleoprotein G3.5e-3693.59Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR

AT2G23930.2 probable small nuclear ribonucleoprotein G3.5e-2892.31Show/hide
Query:  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        MDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR

AT3G11500.1 Small nuclear ribonucleoprotein family protein4.6e-3692.31Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIKLNANR+V+GTLRGFDQFMNLVVDNTVEVNG++KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGGTCAGGACAGCCTCCGGATCTCAAAAAATATATGGACAAAAAGCTTCAGATAAAACTCAACGCTAATCGCTTGGTAATTGGAACTCTTCGAGGCTTTGACCA
GTTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATCGGCATGGTGGTGATTAGAGGAAATAGTGTGGTCACTGTTGAAGCACTTG
AACCTGTAAACAGGATGCAGTGA
mRNA sequenceShow/hide mRNA sequence
CGATTAATTAGGGTTTTTTTCATCTCTCTGACCTCTGTTCTGTTGAATCCTCTTCACAGCTCTTTTTTTTGCGTTCTTCACCATGAGTAGGTCAGGACAGCCTCCGGATC
TCAAAAAATATATGGACAAAAAGCTTCAGATAAAACTCAACGCTAATCGCTTGGTAATTGGAACTCTTCGAGGCTTTGACCAGTTTATGAATCTAGTGGTTGACAACACC
GTGGAAGTGAATGGCAACGAGAAAACTGATATCGGCATGGTGGTGATTAGAGGAAATAGTGTGGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATTGCG
AACGTGTTGGAAGTTGGTTTGATTCTTGCTGCTGATCTGTTTAATAGATGGATTGAGTTAAACATTCGGATTTGTAGTATGTATAATTTTGGGATGTTATGGATTTTAGA
ACGAATTCTTGTACTCCATCATTCTGGACAGTCAGGATTCTAATGTCAGCAATGGGGTTTCTGTATTATTCTGGGAAAGATAGATTCATTGCATTAGGTAAGATTTTTCT
CACGAAACCAAATATTCTCTCTTCTGCCACAGCCCCAAGATCCAAATTCTATTTGTTCCAAGTCTATGAGTGCCACTGTATCATTTCGAAATGTGCTCATTAATCATTTC
AACCATGCGTTGCCAAATCGACCAATTTTATACATGTCCTCTCCTCCATTGTACGTTTTGAAGATACTATCAAAACCTGCTAGTGATTGGAATTTTTCG
Protein sequenceShow/hide protein sequence
MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ