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CSPI06G25780 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G25780
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCOPII coat assembly protein SEC16, putative
Genome locationChr6:22873768..22874244
RNA-Seq ExpressionCSPI06G25780
SyntenyCSPI06G25780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07441.1 putative COPII coat assembly protein SEC16 [Cucumis melo var. makuwa]2.1e-7194.9Show/hide
Query:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA
        MAKS+AQLTYPPPSPSLRRT FLPSSPMPPPN  VSPPPPPSPINLALLSFKSSSQSYTSLKDILP  SASAAAVNSPTAASPANSPYEISIRNRLVKQA
Subjt:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA

Query:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC
        AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFI SSI+PAIIRAFRFCIC
Subjt:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC

XP_008462609.1 PREDICTED: uncharacterized protein LOC103500927 [Cucumis melo]5.6e-7295.54Show/hide
Query:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA
        MAKS+AQLTYPPPSPSLRRTTFLPSSPMPPPN  VSPPPPPSPINLALLSFKSSSQSYTSLKDILP  SASAAAVNSPTAASPANSPYEISIRNRLVKQA
Subjt:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA

Query:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC
        AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFI SSI+PAIIRAFRFCIC
Subjt:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC

XP_011657724.1 early nodulin-20 [Cucumis sativus]1.5e-77100Show/hide
Query:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA
        MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA
Subjt:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA

Query:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF
        AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF
Subjt:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF

XP_022979075.1 uncharacterized protein LOC111478820 [Cucurbita maxima]1.4e-5177.16Show/hide
Query:  MAKSSAQLTYPPPSPS-----LRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNR
        MAKS+AQ TYPPPSPS     L R + +PSS MPP N  +SP PPPSPI+L LLS KSSSQSYTSLKDILPS   SA AVNSPTAASPANS YEI IRNR
Subjt:  MAKSSAQLTYPPPSPS-----LRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNR

Query:  LVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC
        LVKQAAWAYLQPMSASSYSAGPN FHRF LRFSTGNPI SC GFIR  I+P+IIR FR CIC
Subjt:  LVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC

XP_038883302.1 uncharacterized protein LOC120074291 [Benincasa hispida]7.6e-6183.44Show/hide
Query:  MAKSSAQLTYPPPSPS---LRRTTFLPSSPMPPPN---PAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRN
        MAKS+AQ+TYPPPSPS   LR   F+PSSPMPPPN     VSPPPPPSPINL LLSFKSSSQSYTSLKDILPSAS   AAVNSPTAASPANS YEISIRN
Subjt:  MAKSSAQLTYPPPSPS---LRRTTFLPSSPMPPPN---PAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRN

Query:  RLVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC
        RLVKQAAWAYLQPMSASSYSAGPNFFHRF LRFST NPIY C GFIR +I+PAIIR FRFCIC
Subjt:  RLVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC

TrEMBL top hitse value%identityAlignment
A0A0A0KHJ9 Uncharacterized protein7.4e-78100Show/hide
Query:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA
        MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA
Subjt:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA

Query:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF
        AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF
Subjt:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF

A0A1S3CHC6 uncharacterized protein LOC1035009272.7e-7295.54Show/hide
Query:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA
        MAKS+AQLTYPPPSPSLRRTTFLPSSPMPPPN  VSPPPPPSPINLALLSFKSSSQSYTSLKDILP  SASAAAVNSPTAASPANSPYEISIRNRLVKQA
Subjt:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA

Query:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC
        AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFI SSI+PAIIRAFRFCIC
Subjt:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC

A0A5A7SL81 Putative COPII coat assembly protein SEC162.7e-7295.54Show/hide
Query:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA
        MAKS+AQLTYPPPSPSLRRTTFLPSSPMPPPN  VSPPPPPSPINLALLSFKSSSQSYTSLKDILP  SASAAAVNSPTAASPANSPYEISIRNRLVKQA
Subjt:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA

Query:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC
        AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFI SSI+PAIIRAFRFCIC
Subjt:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC

A0A5D3C6C7 Putative COPII coat assembly protein SEC161.0e-7194.9Show/hide
Query:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA
        MAKS+AQLTYPPPSPSLRRT FLPSSPMPPPN  VSPPPPPSPINLALLSFKSSSQSYTSLKDILP  SASAAAVNSPTAASPANSPYEISIRNRLVKQA
Subjt:  MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQA

Query:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC
        AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFI SSI+PAIIRAFRFCIC
Subjt:  AWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC

A0A6J1IS66 uncharacterized protein LOC1114788207.0e-5277.16Show/hide
Query:  MAKSSAQLTYPPPSPS-----LRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNR
        MAKS+AQ TYPPPSPS     L R + +PSS MPP N  +SP PPPSPI+L LLS KSSSQSYTSLKDILPS   SA AVNSPTAASPANS YEI IRNR
Subjt:  MAKSSAQLTYPPPSPS-----LRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNR

Query:  LVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC
        LVKQAAWAYLQPMSASSYSAGPN FHRF LRFSTGNPI SC GFIR  I+P+IIR FR CIC
Subjt:  LVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52520.1 unknown protein1.4e-0739.82Show/hide
Query:  INLALLSFKSSSQS----YTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGF
        ++L L+S   SS+     YTSLKDILPS+S +  +     A + A S   I+IRNRLVKQAA +YLQP S  + S+ P+F  R          + S F  
Subjt:  INLALLSFKSSSQS----YTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGF

Query:  IRSSIVPAIIRAF
        + S+   A++R F
Subjt:  IRSSIVPAIIRAF

AT5G06280.1 unknown protein8.0e-0838.26Show/hide
Query:  PSPSLRRTTFLP--SSPMPPPNPAVSPPPPPSPINLALLSFKSSS-QSYTSLKDILPS---ASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQ
        P+  LRRT  +   ++  PP  P      PPS  +  L+S K SS  +YTSL+DI+ S   +S +  ++N   +   + +  +ISIRNRLVKQAA +YLQ
Subjt:  PSPSLRRTTFLP--SSPMPPPNPAVSPPPPPSPINLALLSFKSSS-QSYTSLKDILPS---ASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQ

Query:  P--MSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFR
        P  +++S  SAG  FF R  L  S G      F F+R  +   I ++FR
Subjt:  P--MSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFR

AT5G06280.3 unknown protein8.0e-0838.26Show/hide
Query:  PSPSLRRTTFLP--SSPMPPPNPAVSPPPPPSPINLALLSFKSSS-QSYTSLKDILPS---ASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQ
        P+  LRRT  +   ++  PP  P      PPS  +  L+S K SS  +YTSL+DI+ S   +S +  ++N   +   + +  +ISIRNRLVKQAA +YLQ
Subjt:  PSPSLRRTTFLP--SSPMPPPNPAVSPPPPPSPINLALLSFKSSS-QSYTSLKDILPS---ASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQ

Query:  P--MSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFR
        P  +++S  SAG  FF R  L  S G      F F+R  +   I ++FR
Subjt:  P--MSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAATCCTCCGCCCAATTAACCTATCCACCGCCGTCCCCATCACTCCGCCGCACAACCTTTCTTCCCTCCTCCCCCATGCCTCCGCCAAACCCAGCCGTTTCCCC
TCCACCACCGCCATCTCCCATTAACTTAGCTCTCCTCTCCTTCAAATCCTCTTCTCAATCCTACACTTCTCTCAAGGACATCCTTCCCTCTGCCTCTGCCTCTGCTGCCG
CCGTCAACTCTCCCACCGCAGCTTCCCCCGCTAACTCCCCCTACGAAATCTCCATCCGCAATCGCCTCGTTAAGCAGGCCGCTTGGGCTTATCTCCAGCCTATGTCCGCT
TCTTCCTATTCCGCCGGCCCCAATTTCTTCCATCGTTTCTGCCTCCGTTTCTCTACTGGAAATCCGATCTACAGTTGTTTTGGATTCATCAGAAGCAGTATTGTTCCGGC
TATAATCCGTGCTTTTCGGTTCTGCATTTGCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAATCCTCCGCCCAATTAACCTATCCACCGCCGTCCCCATCACTCCGCCGCACAACCTTTCTTCCCTCCTCCCCCATGCCTCCGCCAAACCCAGCCGTTTCCCC
TCCACCACCGCCATCTCCCATTAACTTAGCTCTCCTCTCCTTCAAATCCTCTTCTCAATCCTACACTTCTCTCAAGGACATCCTTCCCTCTGCCTCTGCCTCTGCTGCCG
CCGTCAACTCTCCCACCGCAGCTTCCCCCGCTAACTCCCCCTACGAAATCTCCATCCGCAATCGCCTCGTTAAGCAGGCCGCTTGGGCTTATCTCCAGCCTATGTCCGCT
TCTTCCTATTCCGCCGGCCCCAATTTCTTCCATCGTTTCTGCCTCCGTTTCTCTACTGGAAATCCGATCTACAGTTGTTTTGGATTCATCAGAAGCAGTATTGTTCCGGC
TATAATCCGTGCTTTTCGGTTCTGCATTTGCTTTTGA
Protein sequenceShow/hide protein sequence
MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSA
SSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF