CuGenDBv2

Gene ID	CSPI06G26310
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	Chr6:23269382..23270057
RNA-Seq Expression	CSPI06G26310
Synteny	CSPI06G26310
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037454.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.8e-33

45.74

Show/hide

Query:  LLLFVE---DNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN-------------------EMW-------------ILAELKLLPTYQLSVFKAPIG
        LLL +E   DND YI NL+ A+ LFE ASGL  N  KSTISP+N                   + W             I + L  LPTYQLS F+AP+ 
Subjt:  LLLFVE---DNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN-------------------EMW-------------ILAELKLLPTYQLSVFKAPIG

Query:  ICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNSLWKRIILAKYSQSFIEEILTLA
        + K IEK WR+FLWK + + + ++L+ W   T  KE GGLGI K+ DTN +LLCKW+WR+H E N LWKR I AKYS+    +I T+A
Subjt:  ICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNSLWKRIILAKYSQSFIEEILTLA

KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.4e-33

42.86

Show/hide

Query:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------
        ++    +LLFVED++  I NLKN I LF+ ASGLSINL KSTISPIN            W                                        
Subjt:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------

Query:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS
                     I + L  LPTYQLS+FKAP+  CK+IEK+WRNFLWKN  +    HL+ W KIT +KE GGLGI ++ DTNF+LL KWLWR+  E + 
Subjt:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS

Query:  LWKRIILAKY
        LWK+II AKY
Subjt:  LWKRIILAKY

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.3e-33

42.86

Show/hide

Query:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------
        ++    +LLFVED++  I NLKN I LF+ ASGLSINL KSTISPIN            W                                        
Subjt:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------

Query:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS
                     I + L  LPTYQLS+FKAP+  CK+IEK+WRNFLWKN  +    HL+ W KIT  KE GGLGI ++ DTNF+LL KWLWR+  E + 
Subjt:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS

Query:  LWKRIILAKY
        LWK+II AKY
Subjt:  LWKRIILAKY

KAA0041367.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.3e-33

42.86

Show/hide

Query:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------
        ++    +LLFVED++  I NLKN I LF+ ASGLSINL KSTISPIN            W                                        
Subjt:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------

Query:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS
                     I + L  LPTYQLS+FKAP+  CK+IEK+WRNFLWKN  +    HL+ W KIT  KE GGLGI ++ DTNF+LL KWLWR+  E + 
Subjt:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS

Query:  LWKRIILAKY
        LWK+II AKY
Subjt:  LWKRIILAKY

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.4e-33

42.86

Show/hide

Query:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------
        ++    +LLFVED++  I NLKN I LF+ ASGLSINL KSTISPIN            W                                        
Subjt:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------

Query:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS
                     I + L  LPTYQLS+FKAP+  CK+IEK+WRNFLWKN  +    HL+ W KIT +KE GGLGI ++ DTNF+LL KWLWR+  E + 
Subjt:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS

Query:  LWKRIILAKY
        LWK+II AKY
Subjt:  LWKRIILAKY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein

1.1e-33

42.86

Show/hide

Query:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------
        ++    +LLFVED++  I NLKN I LF+ ASGLSINL KSTISPIN            W                                        
Subjt:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------

Query:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS
                     I + L  LPTYQLS+FKAP+  CK+IEK+WRNFLWKN  +    HL+ W KIT  KE GGLGI ++ DTNF+LL KWLWR+  E + 
Subjt:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS

Query:  LWKRIILAKY
        LWK+II AKY
Subjt:  LWKRIILAKY

A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein

1.1e-33

42.86

Show/hide

Query:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------
        ++    +LLFVED++  I NLKN I LF+ ASGLSINL KSTISPIN            W                                        
Subjt:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------

Query:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS
                     I + L  LPTYQLS+FKAP+  CK+IEK+WRNFLWKN  +    HL+ W KIT  KE GGLGI ++ DTNF+LL KWLWR+  E + 
Subjt:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS

Query:  LWKRIILAKY
        LWK+II AKY
Subjt:  LWKRIILAKY

A0A5D3BV09 LINE-1 retrotransposable element ORF2 protein

8.6e-34

45.74

Show/hide

Query:  LLLFVE---DNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN-------------------EMW-------------ILAELKLLPTYQLSVFKAPIG
        LLL +E   DND YI NL+ A+ LFE ASGL  N  KSTISP+N                   + W             I + L  LPTYQLS F+AP+ 
Subjt:  LLLFVE---DNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN-------------------EMW-------------ILAELKLLPTYQLSVFKAPIG

Query:  ICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNSLWKRIILAKYSQSFIEEILTLA
        + K IEK WR+FLWK + + + ++L+ W   T  KE GGLGI K+ DTN +LLCKW+WR+H E N LWKR I AKYS+    +I T+A
Subjt:  ICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNSLWKRIILAKYSQSFIEEILTLA

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein

6.6e-34

42.86

Show/hide

Query:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------
        ++    +LLFVED++  I NLKN I LF+ ASGLSINL KSTISPIN            W                                        
Subjt:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------

Query:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS
                     I + L  LPTYQLS+FKAP+  CK+IEK+WRNFLWKN  +    HL+ W KIT +KE GGLGI ++ DTNF+LL KWLWR+  E + 
Subjt:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS

Query:  LWKRIILAKY
        LWK+II AKY
Subjt:  LWKRIILAKY

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein

6.6e-34

42.86

Show/hide

Query:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------
        ++    +LLFVED++  I NLKN I LF+ ASGLSINL KSTISPIN            W                                        
Subjt:  MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPIN----------EMW----------------------------------------

Query:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS
                     I + L  LPTYQLS+FKAP+  CK+IEK+WRNFLWKN  +    HL+ W KIT +KE GGLGI ++ DTNF+LL KWLWR+  E + 
Subjt:  -------------ILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNS

Query:  LWKRIILAKY
        LWK+II AKY
Subjt:  LWKRIILAKY

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

4.4e-11

33.68

Show/hide

Query:  AELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNSLWKRIILAKY
        A L  +P + +S    P  I   +++  R FLW +  + K  HL++W+K+   K+ GGLG+      N +L+ K  WR   E NSLW  ++  KY
Subjt:  AELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNSLWKRIILAKY

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

1.5e-09

31.11

Show/hide

Query:  LPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNSLWKRIILAKY
        LPTY ++ F  P  +CK I     +F W+N  + K  H   W+ ++  K  GG+G   +   N +LL K +WR      SL  ++  ++Y
Subjt:  LPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGGLGIYKVADTNFSLLCKWLWRFHVEHNSLWKRIILAKY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATGATTGTAATCTCACTCCTTTTATTTGTGGAGGATAATGATGAGTATATCTCGAACCTCAAGAATGCTATTTTCCTCTTTGAAGCTGCATCGGGACTAAGCATAAA
TTTAATCAAATCTACTATATCCCCCATAAATGAAATGTGGATTCTTGCAGAACTGAAGCTCTTACCAACATATCAATTGTCTGTCTTCAAAGCTCCTATTGGCATCTGCA
AATCTATCGAAAAGTCATGGCGTAACTTCCTCTGGAAAAATCATGGTGATGATAAAATTACACATCTTCTGAGATGGAACAAAATCACCATCACCAAAGAAAATGGAGGC
TTGGGTATTTACAAAGTTGCAGACACTAATTTCTCTCTTCTATGTAAATGGCTTTGGAGATTCCATGTTGAACATAATTCCTTGTGGAAGAGAATTATCCTTGCAAAATA
TTCTCAATCTTTCATCGAGGAGATTCTGACTCTTGCATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MMIVISLLLFVEDNDEYISNLKNAIFLFEAASGLSINLIKSTISPINEMWILAELKLLPTYQLSVFKAPIGICKSIEKSWRNFLWKNHGDDKITHLLRWNKITITKENGG
LGIYKVADTNFSLLCKWLWRFHVEHNSLWKRIILAKYSQSFIEEILTLA

CSPI06G26310 (gene) of Cucumber (PI 183967) v1 genome