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CSPI06G27630 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G27630
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionMitochondrial transcription termination factor family protein
Genome locationChr6:24264660..24264845
RNA-Seq ExpressionCSPI06G27630
SyntenyCSPI06G27630
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN48476.1 hypothetical protein Csa_004365 [Cucumis sativus]1.2e-25100Show/hide
Query:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSISR
        MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSISR
Subjt:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSISR
TYK12925.1 Mitochondrial transcription termination factor family protein [Cucumis melo var. makuwa]1.9e-1584.62Show/hide
Query:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI
        M+FIQKTGLSQG KLFKYVV+IICISRLETI Q+VANLKKFGFTEDE F+ I
Subjt:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI
XP_008440198.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 [Cucumis melo]1.9e-1584.62Show/hide
Query:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI
        M+FIQKTGLSQG KLFKYVV+IICISRLETI Q+VANLKKFGFTEDE F+ I
Subjt:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI
XP_031742903.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105436024 [Cucumis sativus]1.2e-25100Show/hide
Query:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSISR
        MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSISR
Subjt:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSISR
XP_038881817.1 uncharacterized protein LOC120073205, partial [Benincasa hispida]1.1e-1266.13Show/hide
Query:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI--SPYLDSIS
        M++IQKTGLSQG K+FKYVV+II ISRLETI  +VANL+KFGFTEDE F+ +  SP + ++S
Subjt:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI--SPYLDSIS
TrEMBL top hitse value%identityAlignment
A0A0A0KL55 Uncharacterized protein5.7e-26100Show/hide
Query:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSISR
        MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSISR
Subjt:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSISR
A0A1S3B056 LOW QUALITY PROTEIN: uncharacterized protein LOC1034847339.1e-1684.62Show/hide
Query:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI
        M+FIQKTGLSQG KLFKYVV+IICISRLETI Q+VANLKKFGFTEDE F+ I
Subjt:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI
A0A5D3CMY9 Mitochondrial transcription termination factor family protein9.1e-1684.62Show/hide
Query:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI
        M+FIQKTGLSQG KLFKYVV+IICISRLETI Q+VANLKKFGFTEDE F+ I
Subjt:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI
A0A6J1IQK9 uncharacterized protein LOC111478530 isoform X21.6e-1262.9Show/hide
Query:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI--SPYLDSIS
        M +IQKTGL+ G K++KY+V+II ISRLETI Q+VANL+KFGFTEDETF+ +  SP + ++S
Subjt:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI--SPYLDSIS
A0A6J1IUG6 uncharacterized protein LOC111478530 isoform X11.6e-1262.9Show/hide
Query:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI--SPYLDSIS
        M +IQKTGL+ G K++KY+V+II ISRLETI Q+VANL+KFGFTEDETF+ +  SP + ++S
Subjt:  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI--SPYLDSIS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79220.1 Mitochondrial transcription termination factor family protein4.3e-1054.35Show/hide
Query:  DFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDE
        ++I+KTG+++  K+FKYV  II +SR+ETI ++V NL+KFGF+E+E
Subjt:  DFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCATACAAAAAACAGGGCTCTCACAGGGTGGCAAGTTGTTCAAATACGTCGTTTCAATCATTTGTATCTCACGACTTGAAACAATTCATCAACAAGTAGCCAA
TTTGAAGAAGTTTGGTTTCACAGAAGATGAGACATTTTCGGCGATCTCCCCTTACCTTGACTCTATCAGTCGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCATACAAAAAACAGGGCTCTCACAGGGTGGCAAGTTGTTCAAATACGTCGTTTCAATCATTTGTATCTCACGACTTGAAACAATTCATCAACAAGTAGCCAA
TTTGAAGAAGTTTGGTTTCACAGAAGATGAGACATTTTCGGCGATCTCCCCTTACCTTGACTCTATCAGTCGATAA
Protein sequenceShow/hide protein sequence
MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSISR