; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G27760 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G27760
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNuclear pore complex protein NUP58 isoform X1
Genome locationChr6:24337954..24338433
RNA-Seq ExpressionCSPI06G27760
SyntenyCSPI06G27760
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0015031 - protein transport (biological process)
GO:0051028 - mRNA transport (biological process)
GO:0005643 - nuclear pore (cellular component)
GO:0008139 - nuclear localization sequence binding (molecular function)
GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647491.1 hypothetical protein Csa_003749 [Cucumis sativus]1.4e-3079.78Show/hide
Query:  RTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVEFSYIPKMEYLSNILLGPTSGCGCFTAAVRIDKLYLLV
        + +  FS DAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFR+QE AQVE  YIPKMEYLS+I    T G GCFTAAVRIDKLYLL+
Subjt:  RTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVEFSYIPKMEYLSNILLGPTSGCGCFTAAVRIDKLYLLV
TYK12916.1 nuclear pore complex protein NUP58 isoform X1 [Cucumis melo var. makuwa]7.5e-1678.18Show/hide
Query:  KTQRTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVE
        +  + +  FSCD IDSR ANAIYLP LTPFLAFLVACCTEYL CGFRKQEYAQVE
Subjt:  KTQRTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVE
TrEMBL top hitse value%identityAlignment
A0A0A0KJG6 Uncharacterized protein4.4e-3078.65Show/hide
Query:  RTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVEFSYIPKMEYLSNILLGPTSGCGCFTAAVRIDKLYLLV
        + +  FS DAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFR+QE AQVE  YIPKMEYLS+I    T G GCFTAAVRI KLYLL+
Subjt:  RTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVEFSYIPKMEYLSNILLGPTSGCGCFTAAVRIDKLYLLV
A0A5D3CR89 Nuclear pore complex protein NUP58 isoform X13.6e-1678.18Show/hide
Query:  KTQRTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVE
        +  + +  FSCD IDSR ANAIYLP LTPFLAFLVACCTEYL CGFRKQEYAQVE
Subjt:  KTQRTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGATCAATTCTTATGAAAACTCAAAGAACAAGACTTGTTTTTTCTTGTGATGCAATTGATTCGAGGGATGCTAACGCAATATATCTTCCTAATCTCACGCCATTCTT
GGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAAACAAGAATATGCCCAAGTGGAATTCTCTTACATTCCAAAGATGGAGTATCTATCGAATA
TTCTTCTTGGACCGACCTCTGGCTGTGGCTGCTTCACAGCGGCCGTCAGGATTGACAAGTTATACCTCTTAGTTGGTTTATATATCAACGTATCTCTACAGCATGTTTTA
ACTTTATTTACTTCAATTACTCACATATGCATTACTTGTGTAATTTGTGTACTGAAATTACTAGTAGTGAGTTTTCGACCCTTTTTCACTCTATTTATATTTTCATTTGG
TGTCATGTTTCCATTGAAATGCCATTTTGTAATTCATCTG
mRNA sequenceShow/hide mRNA sequence
ATGCGATCAATTCTTATGAAAACTCAAAGAACAAGACTTGTTTTTTCTTGTGATGCAATTGATTCGAGGGATGCTAACGCAATATATCTTCCTAATCTCACGCCATTCTT
GGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAAACAAGAATATGCCCAAGTGGAATTCTCTTACATTCCAAAGATGGAGTATCTATCGAATA
TTCTTCTTGGACCGACCTCTGGCTGTGGCTGCTTCACAGCGGCCGTCAGGATTGACAAGTTATACCTCTTAGTTGGTTTATATATCAACGTATCTCTACAGCATGTTTTA
ACTTTATTTACTTCAATTACTCACATATGCATTACTTGTGTAATTTGTGTACTGAAATTACTAGTAGTGAGTTTTCGACCCTTTTTCACTCTATTTATATTTTCATTTGG
TGTCATGTTTCCATTGAAATGCCATTTTGTAATTCATCTG
Protein sequenceShow/hide protein sequence
MRSILMKTQRTRLVFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRKQEYAQVEFSYIPKMEYLSNILLGPTSGCGCFTAAVRIDKLYLLVGLYINVSLQHVL
TLFTSITHICITCVICVLKLLVVSFRPFFTLFIFSFGVMFPLKCHFVIHL