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CSPI06G27780 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G27780
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNuclear pore complex protein NUP58 isoform X1
Genome locationChr6:24347066..24347404
RNA-Seq ExpressionCSPI06G27780
SyntenyCSPI06G27780
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0015031 - protein transport (biological process)
GO:0051028 - mRNA transport (biological process)
GO:0005643 - nuclear pore (cellular component)
GO:0008139 - nuclear localization sequence binding (molecular function)
GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647491.1 hypothetical protein Csa_003749 [Cucumis sativus]1.2e-5798.21Show/hide
Query:  MYAVNSYENSQNKTCFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESFYIPKMEYLSDINSSWTYGHGCFTAAVRIDKLYLLIW
        MYAVNSYE+SQNKTCFS DAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESFYIPKMEYLSDINSSWTYGHGCFTAAVRIDKLYLLIW
Subjt:  MYAVNSYENSQNKTCFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESFYIPKMEYLSDINSSWTYGHGCFTAAVRIDKLYLLIW

Query:  FIYQRIDLYSMF
        FIYQRIDLYSMF
Subjt:  FIYQRIDLYSMF
TYK12916.1 nuclear pore complex protein NUP58 isoform X1 [Cucumis melo var. makuwa]5.8e-2388.71Show/hide
Query:  AVNSYENSQNKTCFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESF
        AVNSYENS+NKTCFSCD IDSR ANAIYLP LTPFLAFLVACCTEYL CGFR+QE AQVESF
Subjt:  AVNSYENSQNKTCFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESF
TrEMBL top hitse value%identityAlignment
A0A0A0KJG6 Uncharacterized protein3.9e-5797.32Show/hide
Query:  MYAVNSYENSQNKTCFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESFYIPKMEYLSDINSSWTYGHGCFTAAVRIDKLYLLIW
        MYAVNSYE+SQNKTCFS DAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESFYIPKMEYLSDINSSWTYGHGCFTAAVRI KLYLLIW
Subjt:  MYAVNSYENSQNKTCFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESFYIPKMEYLSDINSSWTYGHGCFTAAVRIDKLYLLIW

Query:  FIYQRIDLYSMF
        FIYQRIDLYSMF
Subjt:  FIYQRIDLYSMF
A0A5D3CR89 Nuclear pore complex protein NUP58 isoform X12.8e-2388.71Show/hide
Query:  AVNSYENSQNKTCFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESF
        AVNSYENS+NKTCFSCD IDSR ANAIYLP LTPFLAFLVACCTEYL CGFR+QE AQVESF
Subjt:  AVNSYENSQNKTCFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGCGGTCAATTCTTATGAAAACTCACAGAACAAGACTTGTTTTTCTTGTGATGCAATTGATTCGAGGGATGCTAACGCGATATATCTTCCCAATCTCACGCCATT
CTTGGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAGACAAGAAAATGCTCAAGTGGAATCATTTTACATTCCAAAGATGGAGTATCTATCGG
ATATTAACTCTTCTTGGACGTATGGCCATGGCTGCTTCACAGCGGCCGTCAGGATTGACAAGTTATACCTCTTAATTTGGTTTATATATCAACGTATCGATCTCTACAGC
ATGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTATGCGGTCAATTCTTATGAAAACTCACAGAACAAGACTTGTTTTTCTTGTGATGCAATTGATTCGAGGGATGCTAACGCGATATATCTTCCCAATCTCACGCCATT
CTTGGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAGACAAGAAAATGCTCAAGTGGAATCATTTTACATTCCAAAGATGGAGTATCTATCGG
ATATTAACTCTTCTTGGACGTATGGCCATGGCTGCTTCACAGCGGCCGTCAGGATTGACAAGTTATACCTCTTAATTTGGTTTATATATCAACGTATCGATCTCTACAGC
ATGTTTTAA
Protein sequenceShow/hide protein sequence
MYAVNSYENSQNKTCFSCDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESFYIPKMEYLSDINSSWTYGHGCFTAAVRIDKLYLLIWFIYQRIDLYS
MF