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CSPI06G29590 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G29590
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionMADS-box transcription factor 23 isoform X2
Genome locationChr6:25651919..25652257
RNA-Seq ExpressionCSPI06G29590
SyntenyCSPI06G29590
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647540.1 hypothetical protein Csa_003420 [Cucumis sativus]1.7e-3498.7Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQPSPREQQA
        GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQ SPREQQA
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQPSPREQQA
XP_008440514.1 PREDICTED: MADS-box transcription factor 23 isoform X3 [Cucumis melo]3.0e-2685.37Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGII----AAAPIAGDALCVPIHLQPSPREQQ
        GILMHQENIEL NKVSLYCQENMELHRKVYGH+ SRSEMNLA TGNALIPYGII    AAAPIAG+ LCVPIHLQ SP EQQ
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGII----AAAPIAGDALCVPIHLQPSPREQQ
XP_031742506.1 MADS-box transcription factor 23 isoform X1 [Cucumis sativus]1.7e-3498.7Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQPSPREQQA
        GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQ SPREQQA
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQPSPREQQA
XP_031742507.1 MADS-box transcription factor 23 isoform X2 [Cucumis sativus]1.7e-3498.7Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQPSPREQQA
        GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQ SPREQQA
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQPSPREQQA
XP_038882310.1 MADS-box transcription factor 23-like [Benincasa hispida]2.4e-2887.18Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGII--AAAPIAGDALCVPIHLQPSPREQQ
        GILMHQENIEL+NKV+LYCQENMELHRKVYGHDSRSEMNL TGNALIPYGII  AA PIAGDAL VPIHLQ +P EQQ
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGII--AAAPIAGDALCVPIHLQPSPREQQ
TrEMBL top hitse value%identityAlignment
A0A1S3B0V7 MADS-box transcription factor 23 isoform X31.4e-2685.37Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGII----AAAPIAGDALCVPIHLQPSPREQQ
        GILMHQENIEL NKVSLYCQENMELHRKVYGH+ SRSEMNLA TGNALIPYGII    AAAPIAG+ LCVPIHLQ SP EQQ
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGII----AAAPIAGDALCVPIHLQPSPREQQ
A0A1S3B1W8 MADS-box transcription factor 23 isoform X11.4e-2685.37Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGII----AAAPIAGDALCVPIHLQPSPREQQ
        GILMHQENIEL NKVSLYCQENMELHRKVYGH+ SRSEMNLA TGNALIPYGII    AAAPIAG+ LCVPIHLQ SP EQQ
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGII----AAAPIAGDALCVPIHLQPSPREQQ
A0A1S3B214 MADS-box transcription factor 23 isoform X21.4e-2685.37Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGII----AAAPIAGDALCVPIHLQPSPREQQ
        GILMHQENIEL NKVSLYCQENMELHRKVYGH+ SRSEMNLA TGNALIPYGII    AAAPIAG+ LCVPIHLQ SP EQQ
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHD-SRSEMNLA-TGNALIPYGII----AAAPIAGDALCVPIHLQPSPREQQ
A0A6J1INS2 MADS-box transcription factor 23-like isoform X21.0e-2478.48Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAA---PIAGDA-LCVPIHLQPSPREQ
        GILMHQ+N+EL+NKV+L+CQENMELHRKVYGHDSR EM++ATGN LIPYGII+AA   PI GDA L VPIHLQ SPREQ
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAA---PIAGDA-LCVPIHLQPSPREQ
A0A6J1IST8 MADS-box transcription factor 23-like isoform X11.0e-2478.48Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAA---PIAGDA-LCVPIHLQPSPREQ
        GILMHQ+N+EL+NKV+L+CQENMELHRKVYGHDSR EM++ATGN LIPYGII+AA   PI GDA L VPIHLQ SPREQ
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAA---PIAGDA-LCVPIHLQPSPREQ
SwissProt top hitse value%identityAlignment
Q6EP49 MADS-box transcription factor 272.0e-0453.85Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMN
        G L+HQEN+EL  K+SL  QEN EL++K+Y  +  SE+N
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMN
Arabidopsis top hitse value%identityAlignment
AT3G57230.1 AGAMOUS-like 162.6e-0443.14Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGI
        G L+HQEN++L  KV+L  Q+NMELH KV        + +A  N+L+  G+
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGI
AT3G57230.2 AGAMOUS-like 162.6e-0443.14Show/hide
Query:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGI
        G L+HQEN++L  KV+L  Q+NMELH KV        + +A  N+L+  G+
Subjt:  GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAATTCTGATGCACCAAGAAAATATAGAGTTGAGCAACAAAGTAAGCCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTATGGACATGATTCAAGATCAGA
GATGAACTTGGCCACCGGAAATGCCTTAATTCCATATGGTATCATCGCTGCGGCCCCTATTGCCGGCGACGCTCTGTGTGTGCCAATCCACCTTCAGCCCAGCCCGCGGG
AGCAACAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
GGAATTCTGATGCACCAAGAAAATATAGAGTTGAGCAACAAAGTAAGCCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTATGGACATGATTCAAGATCAGA
GATGAACTTGGCCACCGGAAATGCCTTAATTCCATATGGTATCATCGCTGCGGCCCCTATTGCCGGCGACGCTCTGTGTGTGCCAATCCACCTTCAGCCCAGCCCGCGGG
AGCAACAAGCTTAA
Protein sequenceShow/hide protein sequence
GILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQPSPREQQA