; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G29600 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G29600
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionMADS box transcription factor
Genome locationChr6:25654924..25655428
RNA-Seq ExpressionCSPI06G29600
SyntenyCSPI06G29600
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR033896 - MADS MEF2-like
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008440512.1 PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis melo]8.4e-38100Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

XP_008440514.1 PREDICTED: MADS-box transcription factor 23 isoform X3 [Cucumis melo]8.4e-38100Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

XP_008440515.1 PREDICTED: MADS-box transcription factor 23 isoform X4 [Cucumis melo]8.4e-38100Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

XP_031742506.1 MADS-box transcription factor 23 isoform X1 [Cucumis sativus]8.4e-38100Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

XP_031742507.1 MADS-box transcription factor 23 isoform X2 [Cucumis sativus]8.4e-38100Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

TrEMBL top hitse value%identityAlignment
A0A1S3B0V7 MADS-box transcription factor 23 isoform X34.1e-38100Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

A0A1S3B1B7 MADS-box transcription factor 23 isoform X44.1e-38100Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

A0A1S3B1W8 MADS-box transcription factor 23 isoform X14.1e-38100Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

A0A1S3B214 MADS-box transcription factor 23 isoform X24.1e-38100Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

A0A6J1BUC2 MADS-box transcription factor 23-like9.4e-3590.8Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNSASRQVTFSKRRKGL+KKAKEL+ILCDAE+GLIIFSSSGKHYEFAS+S+ SIIEKYNRRKEEDELLLNP SD+K
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

SwissProt top hitse value%identityAlignment
Q38840 Agamous-like MADS-box protein AGL172.6e-2671.26Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVI++ID+S SRQVTFSKRRKGLIKKAKEL+ILCDAEV LIIFS++ K Y+FASSS+ S IE++N  K E++ L+NP S+VK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

Q6EP49 MADS-box transcription factor 274.1e-2767.82Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNS SRQVTFSKRR G+ KKAKEL+ILCDAEVGL+IFSS+G+ YE++S+SM S+I++Y + K+E + + NP S++K
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

Q6VAM4 MADS-box transcription factor 231.3e-2567.82Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKI I+RIDN+ SRQVTFSKRR GL KKA+ELSILCDAEVGL++FSS+ + Y+FASSSM SIIE+YN  KE+    +N  S+ K
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

Q9SI38 MADS-box transcription factor ANR11.7e-2877.27Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFAS-SSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNS SRQVTFSKRR GL+KKAKELSILCDAEVG+IIFSS+GK Y++AS SSM +IIE+YNR KEE   LLN  S++K
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFAS-SSMHSIIEKYNRRKEEDELLLNPISDVK

Q9SZJ6 Agamous-like MADS-box protein AGL213.0e-3078.16Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVI+RID+S SRQVTFSKRRKGLIKKAKEL+ILCDAEVGLIIFSS+GK Y+FASSSM S+I++YN+ K E + LLNP S+VK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

Arabidopsis top hitse value%identityAlignment
AT2G14210.1 AGAMOUS-like 441.2e-2977.27Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFAS-SSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVIRRIDNS SRQVTFSKRR GL+KKAKELSILCDAEVG+IIFSS+GK Y++AS SSM +IIE+YNR KEE   LLN  S++K
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFAS-SSMHSIIEKYNRRKEEDELLLNPISDVK

AT2G22630.1 AGAMOUS-like 171.9e-2771.26Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVI++ID+S SRQVTFSKRRKGLIKKAKEL+ILCDAEV LIIFS++ K Y+FASSS+ S IE++N  K E++ L+NP S+VK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

AT3G57230.1 AGAMOUS-like 161.8e-2565.52Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKI I+RI+NS SRQVTFSKRR GL+KKAKEL+ILCDAEVG+IIFSS+G+ Y+F+SSSM S+IE+Y+  K E     +P S+++
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

AT3G57230.2 AGAMOUS-like 161.8e-2565.52Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKI I+RI+NS SRQVTFSKRR GL+KKAKEL+ILCDAEVG+IIFSS+G+ Y+F+SSSM S+IE+Y+  K E     +P S+++
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

AT4G37940.1 AGAMOUS-like 212.1e-3178.16Show/hide
Query:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK
        MGRGKIVI+RID+S SRQVTFSKRRKGLIKKAKEL+ILCDAEVGLIIFSS+GK Y+FASSSM S+I++YN+ K E + LLNP S+VK
Subjt:  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGAGGGAAGATTGTGATAAGAAGGATCGATAATTCAGCAAGTAGACAAGTAACTTTTTCAAAGAGAAGAAAGGGACTTATTAAAAAGGCCAAAGAACTCTCTAT
TCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCTAGTTCTGGCAAACACTACGAATTTGCAAGCTCCAGCATGCATTCAATAATTGAGAAATATAACAGAAGGAAGG
AGGAAGATGAATTACTGTTGAATCCAATTTCAGATGTGAAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGAGGGAAGATTGTGATAAGAAGGATCGATAATTCAGCAAGTAGACAAGTAACTTTTTCAAAGAGAAGAAAGGGACTTATTAAAAAGGCCAAAGAACTCTCTAT
TCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCTAGTTCTGGCAAACACTACGAATTTGCAAGCTCCAGCATGCATTCAATAATTGAGAAATATAACAGAAGGAAGG
AGGAAGATGAATTACTGTTGAATCCAATTTCAGATGTGAAG
Protein sequenceShow/hide protein sequence
MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK