; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G29760 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G29760
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein SKIP34
Genome locationChr6:25741261..25742244
RNA-Seq ExpressionCSPI06G29760
SyntenyCSPI06G29760
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647547.1 hypothetical protein Csa_002974 [Cucumis sativus]8.5e-3998.85Show/hide
Query:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVV
        MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYV+
Subjt:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVV
XP_008440533.1 PREDICTED: protein SKIP34 [Cucumis melo]1.3e-4297.92Show/hide
Query:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
        MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Subjt:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
XP_011657944.1 protein SKIP34 [Cucumis sativus]6.7e-44100Show/hide
Query:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
        MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Subjt:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
XP_022950522.1 protein SKIP34 [Cucurbita moschata]1.5e-3587.63Show/hide
Query:  MCNGHHRPLFRGSLPPYQTSVPENGA-VSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
        MCNGHHR LFRGS+ P QTSVPENG   SVVDNLRGRL ETE RLAQVRAREA LSRLLEEMKRLVSVMEILENYLKR+YSDRQEYVVRLL+PVSRK
Subjt:  MCNGHHRPLFRGSLPPYQTSVPENGA-VSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
XP_023544310.1 protein SKIP34 [Cucurbita pepo subsp. pepo]3.3e-3585.42Show/hide
Query:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
        MCNGHHR LFRG++ P QTSVPENG  SVVDNLRGRL ETE RLAQVRAREA LSRLLEEMKRLV VMEILENYLKR+Y DRQEYVVRLL+PVSRK
Subjt:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
TrEMBL top hitse value%identityAlignment
A0A0A0KIR5 Uncharacterized protein3.3e-44100Show/hide
Query:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
        MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Subjt:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
A0A1S3B1B8 protein SKIP346.1e-4397.92Show/hide
Query:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
        MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Subjt:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
A0A5D3CN14 Protein SKIP346.1e-4397.92Show/hide
Query:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
        MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Subjt:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
A0A6J1GF20 protein SKIP347.3e-3687.63Show/hide
Query:  MCNGHHRPLFRGSLPPYQTSVPENGA-VSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
        MCNGHHR LFRGS+ P QTSVPENG   SVVDNLRGRL ETE RLAQVRAREA LSRLLEEMKRLVSVMEILENYLKR+YSDRQEYVVRLL+PVSRK
Subjt:  MCNGHHRPLFRGSLPPYQTSVPENGA-VSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
A0A6J1IV54 protein SKIP342.1e-3584.38Show/hide
Query:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
        MCNGHHR LFRGS+ P QTSVPENG  SVVDNLRGRL ETE RLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+Y DRQEYVVRLL+P+SRK
Subjt:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
SwissProt top hitse value%identityAlignment
Q8GWU7 Protein SKIP343.6e-1652.08Show/hide
Query:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
        MC GH++ L   S    ++   E+   SVVD+LR RL ETE RL + RAREAELSR LE MKR VSVMEI+E +L+R++ ++++ + RL SPVS K
Subjt:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Arabidopsis top hitse value%identityAlignment
AT5G65495.1 unknown protein2.6e-1752.08Show/hide
Query:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
        MC GH++ L   S    ++   E+   SVVD+LR RL ETE RL + RAREAELSR LE MKR VSVMEI+E +L+R++ ++++ + RL SPVS K
Subjt:  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAACGGTCACCACCGACCTTTGTTCAGAGGTAGCCTTCCTCCCTACCAGACCTCCGTACCGGAAAACGGCGCCGTATCCGTTGTGGACAACCTACGGGGTCGATT
AGAGGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTATCTGTGATGGAGATCCTCGAGAACT
ACCTGAAGCGGCAGTACAGCGACCGTCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAG
mRNA sequenceShow/hide mRNA sequence
GCGACACTGAATTGAGCGTAACATCTACAATATGCTATACTAAACCGCCAAATTAAGAAATGTAGATTCCAACAAAAGTTTACCACCAAATCAAAATAACGTTTCTCCTA
ACGGCAGGGCTACGACGTCGTTTGGAGTTGGACCATACCCACCCAACCCAAGGATCCGTTTTGACCATAAGTTTCAAGAAGTCAAAATTCATCCTCAGAATTCAGAGCAG
CTCCAAGAATCCGATTTGTTTATCCAAATACCGATTCATCCCTCTTTCCGCCGATCGTCGATTTTCAGTTTCCGCCATGTGTAACGGTCACCACCGACCTTTGTTCAGAG
GTAGCCTTCCTCCCTACCAGACCTCCGTACCGGAAAACGGCGCCGTATCCGTTGTGGACAACCTACGGGGTCGATTAGAGGAAACCGAGTTGCGGCTGGCTCAAGTTAGG
GCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAGCGGCAGTACAGCGACCGTCAAGAATA
TGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAGAAATTCCTCTTCGCCGTCGGTGTCTATAATTTTAGCTGTACCATCCAAAAACTCGTTTTGTTTACATGCCTCT
TCGCTCTTCTCATTCTCAATCCTCGTAGATTGTAATCGCCACCAAATGTATGGATTTATTCCCCCTAGATTTCACTTGTGAATGGAATCGTAGAATCGATACTGTTAGAA
TCGAGGGGGATTTTCAGTTTTTTGAATGAGAGCGACTTGCAAATCGCTTAAGACGATCATTTTGTTGTTTCTTGATGGAATATATGGCAGTTTTCTGTAATCTAATTAGT
CATATTGTAAGTATTTCTCAGATTAACATTGGTTTTAAAAGGTTTTTAGACGAAACTTATGTCAAATTCATCTTACTTGGGAATGAAATCGTGGAATTGATACC
Protein sequenceShow/hide protein sequence
MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK