CuGenDBv2

Gene ID	CSPI06G29940
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	vegetative cell wall protein gp1-like
Genome location	Chr6:25872877..25873886
RNA-Seq Expression	CSPI06G29940
Synteny	CSPI06G29940
Gene Ontology terms	NA
InterPro domains	IPR044959 - Classical arabinogalactan protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036330.1 hypothetical protein E6C27_scaffold18G001290 [Cucumis melo var. makuwa]

1.2e-61

90.18

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Query:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPIST
        MGFSGVRFV+IFALLTRLCMAQAP PAPGSPQPLTPPSATPAPSP+VLPPSPTPTPNRAPSPSPTPVSPSPAPDA SPAP   AP P PI+ PTPTPIST
Subjt:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPIST

Query:  PTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS
        PTPSGGPV+PPIASPPSPTG+EVPSPAPQGP ADNPAGA SHIGGAATLGIALAGTLF VILS
Subjt:  PTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS

XP_022950235.1 vegetative cell wall protein gp1-like [Cucurbita moschata]

4.2e-30

60.89

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Query:  MGFSGVRFVLIFALLTRLCMAQAPAPAPG----SPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAP---API----APTPTP
        MG SGVR V+IFAL+  LC AQAPAP P     SP+P+ P  ATPAPSP+  PPSP+ +P RAPSPSPT  SPSPA +A SPAP   AP     APTP+P
Subjt:  MGFSGVRFVLIFALLTRLCMAQAPAPAPG----SPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAP---API----APTPTP

Query:  -ISTPTPTPISTPTPS----GGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS
          S PTP P S P PS    G PV+PPIASPPSP+  + PSP P+ PAAD+PAGA SHIGGA TLGIA+AGTL  ++++
Subjt:  -ISTPTPTPISTPTPS----GGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS

XP_022978568.1 vegetative cell wall protein gp1-like [Cucurbita maxima]

5.9e-32

62.86

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Query:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAP---API----APTPTP-IST
        MGFSGVR V+IFAL+  LC AQAPAPA  SP+P+ P  ATPAPSP+  PPSP+ +P RAPSPSPT  SPSPA +A SPAP   AP     APTP+P  S 
Subjt:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAP---API----APTPTP-IST

Query:  PTPTPISTPTPS----GGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS
        PTP P S P PS    G PV+PPIASPPSP+  + PSP P+ PAAD+PAGA SHIGGA TLGIA+AGTL  ++++
Subjt:  PTPTPISTPTPS----GGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS

XP_023544207.1 vegetative cell wall protein gp1-like [Cucurbita pepo subsp. pepo]

1.3e-31

62.01

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Query:  MGFSGVRFVLIFALLTRLCMAQAPAPAPG----SPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAP---API----APTPTP
        MGFSGVR V+IFAL+  LCMAQAPAP P     SP+P+ P  ATPAPSP+  PP+P+ +P RAPSPSPT  SPSPA +A SPAP   AP     APTP+P
Subjt:  MGFSGVRFVLIFALLTRLCMAQAPAPAPG----SPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAP---API----APTPTP

Query:  -ISTPTPTPISTPTPS----GGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS
          S PTP P S P PS    G PV+PPIASPPSP+  E PSP P+ PAAD+PAGA SHIGGA TLGIA+AGTL  ++++
Subjt:  -ISTPTPTPISTPTPS----GGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS

XP_038881138.1 vegetative cell wall protein gp1-like [Benincasa hispida]

4.9e-47

77.91

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Query:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPIST
        MGFSGVR+V+IFALLTRLCMAQAPAPAPGS QPL P   TPAPSP+V PPSPTPTPNRAPS SP P SPSPAP+A SPAPA  AP P   + PTP P S+
Subjt:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPIST

Query:  PTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS
         TPSGGPV+PPIASPPSPTG+EVPS APQ PAADNPAGA SHIGGAA  GIA+AGTLF VIL+
Subjt:  PTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KG74 Uncharacterized protein

8.7e-66

94.48

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Query:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPIST
        MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSP+VLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAPAPIA        PTPTPIST
Subjt:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPIST

Query:  PTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS
        PTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS
Subjt:  PTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS

A0A5D3CNQ6 Uncharacterized protein

5.9e-62

90.18

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Query:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPIST
        MGFSGVRFV+IFALLTRLCMAQAP PAPGSPQPLTPPSATPAPSP+VLPPSPTPTPNRAPSPSPTPVSPSPAPDA SPAP   AP P PI+ PTPTPIST
Subjt:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPIST

Query:  PTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS
        PTPSGGPV+PPIASPPSPTG+EVPSPAPQGP ADNPAGA SHIGGAATLGIALAGTLF VILS
Subjt:  PTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS

A0A6J1GF55 vegetative cell wall protein gp1-like

2.0e-30

60.89

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Query:  MGFSGVRFVLIFALLTRLCMAQAPAPAPG----SPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAP---API----APTPTP
        MG SGVR V+IFAL+  LC AQAPAP P     SP+P+ P  ATPAPSP+  PPSP+ +P RAPSPSPT  SPSPA +A SPAP   AP     APTP+P
Subjt:  MGFSGVRFVLIFALLTRLCMAQAPAPAPG----SPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAP---API----APTPTP

Query:  -ISTPTPTPISTPTPS----GGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS
          S PTP P S P PS    G PV+PPIASPPSP+  + PSP P+ PAAD+PAGA SHIGGA TLGIA+AGTL  ++++
Subjt:  -ISTPTPTPISTPTPS----GGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS

A0A6J1ITI1 vegetative cell wall protein gp1-like

2.8e-32

62.86

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Query:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAP---API----APTPTP-IST
        MGFSGVR V+IFAL+  LC AQAPAPA  SP+P+ P  ATPAPSP+  PPSP+ +P RAPSPSPT  SPSPA +A SPAP   AP     APTP+P  S 
Subjt:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAP---API----APTPTP-IST

Query:  PTPTPISTPTPS----GGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS
        PTP P S P PS    G PV+PPIASPPSP+  + PSP P+ PAAD+PAGA SHIGGA TLGIA+AGTL  ++++
Subjt:  PTPTPISTPTPS----GGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS

A0A6J1KP28 classical arabinogalactan protein 4-like

1.3e-16

46.01

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Query:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPIST
        MGFSGVRF+++ ALL   CMAQAPAP              PAP+P   P  P P     P+PS +P SP+PAP+ ++P PAPI P              +
Subjt:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPIST

Query:  PTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS
         +P+GGPV+P +ASP        PS AP+GP ADNP GA S IG A TLG+A+AG+L  V+L+
Subjt:  PTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS

SwissProt top hits

e value

%identity

Alignment

O10341 Uncharacterized 29.3 kDa protein

2.3e-07

48.41

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Query:  APAPAPG-SPQPLTPPSATPAPSPIVLP-PSPTPTPNRAPSPSPTPVSPSPAPD-AASPAPAPIAPTPTPISTPTPTPISTPTPSGGPVLPPIASP-PSP
        +P P P  SP P   P+ +P PSP   P P+P+PTP+  P+PSPTP SP+P P    SP P P +PTPTP  TP+PTP  TPTPS  P   P  SP PSP
Subjt:  APAPAPG-SPQPLTPPSATPAPSPIVLP-PSPTPTPNRAPSPSPTPVSPSPAPD-AASPAPAPIAPTPTPISTPTPTPISTPTPSGGPVLPPIASP-PSP

Query:  TGMEVPSPAPQGPAADNPAGAGSHIG
        T    P+P+P  P +  P  + S +G
Subjt:  TGMEVPSPAPQGPAADNPAGAGSHIG

P19275 Viral protein TPX

3.7e-05

46.15

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Query:  PAPAPGSPQPLTPPSATPAPSPIVLP-PSPTPTPNRAPSPSPTP----------VSPSPAPDAASPAPAPIAPTPTPISTPTPTPISTPTPSGGPVLPPI
        P P P +P P   P+ TP P+P   P P+PTPTP   P+P+PTP          V+PSP P   +P P P  PTPTP  TPTPTP  TPTP+  P   P 
Subjt:  PAPAPGSPQPLTPPSATPAPSPIVLP-PSPTPTPNRAPSPSPTP----------VSPSPAPDAASPAPAPIAPTPTPISTPTPTPISTPTPSGGPVLPPI

Query:  ASP-PSPTGMEVPSPAP
         +P P+PT    P+P P
Subjt:  ASP-PSPTGMEVPSPAP

Q9FPQ6 Vegetative cell wall protein gp1

9.8e-06

45.3

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Query:  PAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSP----TPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPISTPTPSGGPVLPPIASPPSPT
        P+PAP SP P +P   +PAP     P  P+P+P   PSPSP     P+ PSPAP + SP   P+ P+P+P   P+P P S   PS  P +PP  +PPSP 
Subjt:  PAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSP----TPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPISTPTPSGGPVLPPIASPPSPT

Query:  GMEVPSPAPQGPAADNP
            PSPAP  PA   P
Subjt:  GMEVPSPAPQGPAADNP

Arabidopsis top hits

e value

%identity

Alignment

AT5G56330.1 alpha carbonic anhydrase 8

1.9e-04

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Query:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPL---TP--PSATPAPSPIVLPPSPTPTPNR-APSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPT
        M  S + +VL+   ++   ++ APAP P  P+P    TP  P  TPAP+P    P P PTP +  P+P+PTP  P PAP    P P P  P PTP   P 
Subjt:  MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPL---TP--PSATPAPSPIVLPPSPTPTPNR-APSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPT

Query:  PTPISTPTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAAD
        P P   PTP      P  A  P+P     P PAP G   D
Subjt:  PTPISTPTPSGGPVLPPIASPPSPTGMEVPSPAPQGPAAD

Sequences

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CDS sequence

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ATGGGATTCTCCGGGGTTCGATTCGTTCTGATTTTTGCTTTGTTGACGAGGTTATGTATGGCGCAGGCGCCGGCTCCGGCACCGGGTTCTCCACAGCCTCTAACTCCTCC
ATCAGCCACACCGGCGCCTTCTCCGATTGTTTTACCTCCATCTCCAACTCCGACGCCAAACAGAGCACCATCGCCTTCACCGACTCCGGTATCGCCCTCACCCGCTCCGG
ATGCTGCGTCACCCGCTCCAGCGCCTATTGCTCCTACTCCAACTCCAATCTCTACTCCTACTCCAACTCCAATCTCTACTCCTACTCCTTCCGGTGGTCCTGTCCTTCCA
CCCATTGCTTCTCCTCCTTCACCCACTGGAATGGAGGTGCCTTCACCAGCACCCCAAGGCCCGGCGGCCGATAACCCAGCTGGAGCGGGGTCGCACATCGGCGGAGCAGC
GACGTTGGGGATCGCTTTGGCTGGTACTCTGTTTGGAGTGATTTTATCGTAG

mRNA sequence

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CCACCCGCTACTGAGATACAAAGCGAAACAAGCAAAGTGAATTCTGTGACCGAATTGTTGCTTTCTTAAACGCCCTCGTTTGCCTCTTCCACTTTCACTACCTTCTTTGA
GATACTCTGTTTTGACGAAAACAAATCCTTTCCCTCTTTCTTCCCGATAAAGACGATGGGATTCTCCGGGGTTCGATTCGTTCTGATTTTTGCTTTGTTGACGAGGTTAT
GTATGGCGCAGGCGCCGGCTCCGGCACCGGGTTCTCCACAGCCTCTAACTCCTCCATCAGCCACACCGGCGCCTTCTCCGATTGTTTTACCTCCATCTCCAACTCCGACG
CCAAACAGAGCACCATCGCCTTCACCGACTCCGGTATCGCCCTCACCCGCTCCGGATGCTGCGTCACCCGCTCCAGCGCCTATTGCTCCTACTCCAACTCCAATCTCTAC
TCCTACTCCAACTCCAATCTCTACTCCTACTCCTTCCGGTGGTCCTGTCCTTCCACCCATTGCTTCTCCTCCTTCACCCACTGGAATGGAGGTGCCTTCACCAGCACCCC
AAGGCCCGGCGGCCGATAACCCAGCTGGAGCGGGGTCGCACATCGGCGGAGCAGCGACGTTGGGGATCGCTTTGGCTGGTACTCTGTTTGGAGTGATTTTATCGTAGACG
TTGATGCGTTGGGTCAATTTAGAGATCTAAATTTGAAGGTGAATTGGAGTGATGGCTGATGGAATTCTTTTGCTTTTTTATTCTTCTTTAAATCTCTTTTCCACACTACT
GCCATTCACATAATTTCATTGTTGTTATTATTATTTTAGTGAGTTGTGGTTTGTAATTTGGATAGTTTTTGGTTACTTTTTTAGTATTCATTGTTCTTCTGTTAATTATA
TTTGAATTCTTTGTAGATCGGATTAGTGATGAATAAGAGCTTTTTCTTTTCTTTTTATATGTTTGAAATCTTTAGTGTCTTTGTTCAGTGTGGTTGTAAAGAGAAGTGAT
TTATGAGATACCTTTTCTGT

Protein sequence

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MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPIVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPAPAPIAPTPTPISTPTPTPISTPTPSGGPVLP
PIASPPSPTGMEVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS

CSPI06G29940 (gene) of Cucumber (PI 183967) v1 genome