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CSPI06G30990 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G30990
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description50S ribosomal protein L6, putative
Genome locationChr6:26494529..26497680
RNA-Seq ExpressionCSPI06G30990
SyntenyCSPI06G30990
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000702 - Ribosomal protein L6
IPR002358 - Ribosomal protein L6, conserved site
IPR019906 - Ribosomal protein L6, bacterial-type
IPR020040 - Ribosomal protein L6, alpha-beta domain
IPR036789 - Ribosomal protein L6, alpha-beta domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
NP_001235881.2 60S ribosomal protein L6 [Glycine max]2.5e-4996.08Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNV+CCTGIDKQRVHQFAA VR+CKPPEVYKGKGIMYVDEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

PON38569.1 Ribosomal protein [Parasponia andersonii]2.5e-4996.08Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        MEA+FFRFLKIVGVGYKARAE+AGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMY+DEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_004143514.1 uncharacterized protein LOC101220210 [Cucumis sativus]1.3e-50100Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_008440709.1 PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo]8.7e-5098.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAAAVRSCKPPEVYKGKGIMY+DEVIKRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_022950399.1 uncharacterized protein LOC111453510 [Cucurbita moschata]3.9e-5098.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMY+DEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

TrEMBL top hitse value%identityAlignment
A0A0A0KJ40 Ribosomal_L6 domain-containing protein6.5e-51100Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A1S3B2D0 60S ribosomal protein L6, mitochondrial4.2e-5098.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAAAVRSCKPPEVYKGKGIMY+DEVIKRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A5D3CL55 60S ribosomal protein L64.2e-5098.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAAAVRSCKPPEVYKGKGIMY+DEVIKRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1GFP3 uncharacterized protein LOC1114535101.9e-5098.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMY+DEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1IQJ4 uncharacterized protein LOC1114785181.9e-5098.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMY+DEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

SwissProt top hitse value%identityAlignment
B2IK77 50S ribosomal protein L63.7e-1951.04Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        F R L+I GVGYKA  +  G+ L L LGYSH++   +P  + +   K   V  TGIDKQRV Q AA +R+ +PPE YKGKG+ Y  E I RK+GKK
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

P26861 60S ribosomal protein L6, mitochondrial7.4e-3669Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        MEAKFF FL+I+GVGYKA   A G +LYLKLG+SHE+ L V P+VRVFC K N++CCTG+D Q+V QFAA V+SCKPPEVYKGKGI Y +E+I +KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

P82193 50S ribosomal protein L6, chloroplastic2.2e-1950Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK
        F + L++VGVGY+A  E  G+ L L LG+SH V + +P  ++V   +N  V  +G DK  V QFAA +RS +PPE YKGKG+ YVDEV++RK+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK

Q2JQN4 50S ribosomal protein L61.7e-1950Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK
        F R L++VGVGY  RA   G  L L +GYSH VE+  PP +++    NNV+  +GIDK+ V   AA +R+ +PPE YKGKGI YV E ++RK GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK

Q38US6 50S ribosomal protein L63.7e-1948.98Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK
        F + L ++GVGY  RA+  G+ L L +GYSH VE+  P  V V    N  +  +GI KQ+V QFAA +R  +PPE YKGKGI Y DE ++RK+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK

Arabidopsis top hitse value%identityAlignment
AT1G05190.1 Ribosomal protein L6 family2.9e-1944.9Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK
        F + L +VGVGY+A  +  G+ L L LG+SH V++ +P +++V   +N  +  +G DK  + QFAA VR  +PPE YKGKG+ Y DE+++RK+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK

AT2G18400.1 ribosomal protein L6 family protein6.4e-5192.16Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAE AGR LYLKLGYSHEVEL VPPAVRVFCFKNNVVCCTGIDKQRVHQFAA VRSCKPPE YKGKGIMY DEV+K+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCTGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGT
TGAACTAACTGTTCCGCCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAACAAAGGGTACACCAATTTGCTGCTGCAGTTCGTA
GCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATGTCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTAAATAA
mRNA sequenceShow/hide mRNA sequence
ACATTTCAGTCGGGTCTTCAAAGGGTTATTCCTACAATTTTTCCAATACTTATCTGAAAAAAAAAATGTTTTCGCTTTTTTATAAACCATATTACCTTCGGCCACTGCAG
CCGCCCCGTAGCACGCCGCCGTTCACCCCACTTCGCGCGCTGTTTCCGTTCCGACCACGCTCGTTACCTCTCTGTCGTAGCACAATCTTTAATCGCAAGCCCTTATAATC
CCTCCTCCTCTCAATCACTCACTCGCCCTACTTCCAGGTAAGCGGAAACTATAATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGTTACAAAGCCAGA
GCTGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAACTAACTGTTCCGCCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATG
TTGCACAGGGATTGACAAACAAAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATGTCGACGAGGTCA
TAAAGAGGAAACAAGGAAAGAAGTCTAAATAAGATAACAGAAGCACAAAATCCCTCATTGATCTCTATTCAGACACAAAGTGCCTCAGTTATGAATAATTGTTCTTGTTG
TATGCATGTTTTTAGAGCATTCCATGAATTAAGCCATGCGACTGAGACTGTAATTGCTTCAATGCCTATTCTTGAAATTTCGTCTCATCGATCATTAATGTTGAATGTTG
AAGAATGCAGGCCATGCAAGAAAAGGCTATTTGAGTTGAGGGTTGTTGACCATTAATCCTTTTTTTCCAATGTGAGATTGAGCCTCTGACCATGTTGATCATTGAGGTTC
AACTCTTGAACTATTATTAGTAACGCCTTCTTTTCTTCGCAAGATGTTTAAGCCAATTTTCTCACGAACCTTCATTAAAAGTTTCAAACAAAACAGC
Protein sequenceShow/hide protein sequence
MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKKSK