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CSPI06G32560 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G32560
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRNA-binding protein 8A
Genome locationChr6:27377112..27380440
RNA-Seq ExpressionCSPI06G32560
SyntenyCSPI06G32560
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0005488 - binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011658091.1 uncharacterized protein LOC101212199 [Cucumis sativus]3.4e-6897.28Show/hide
Query:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSL
        MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP   AQKASKRSLKNEPS+VFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSL
Subjt:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSL

Query:  GAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLPQH
        GAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLPQH
Subjt:  GAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLPQH
XP_016899190.1 PREDICTED: uncharacterized protein LOC103485204 [Cucumis melo]7.4e-6393.84Show/hide
Query:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS
        MSRIDDLPYSRPPKQKALHQKASTASH+Q+KDPS+RIKGSFP   AQKASKRSLKNEPSIVFQQPERSNSDSLPD SSASGNEYRALRRKYLLLEEESF+
Subjt:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS

Query:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
        LGAELK VEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
Subjt:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
XP_022950616.1 uncharacterized protein LOC111453661 [Cucurbita moschata]1.1e-5888.36Show/hide
Query:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS
        MSRIDDLP+SRPPKQKA HQKASTASH+Q KDP+DRIKGSFP   AQK+SKRSLKNEPS+  QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESFS
Subjt:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS

Query:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
        LG ELK VEDEVK LEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
Subjt:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
XP_023545100.1 uncharacterized protein LOC111804503 [Cucurbita pepo subsp. pepo]3.8e-5989.04Show/hide
Query:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPA---QKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS
        MSRIDDLPYSRPPKQKA HQKASTASH+Q KDP+DRIKGSFPA   QK+SKRSLKNEPS+  QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESFS
Subjt:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPA---QKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS

Query:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
        LG ELK VEDEVK LEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
Subjt:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
XP_038881521.1 uncharacterized protein LOC120073026 [Benincasa hispida]2.6e-6089.04Show/hide
Query:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSF---PAQKASKRSLKNEPSIVFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSL
        MSRIDDLPYS+PPKQKALHQKAS ASH+Q KDP+DRIKGSF    AQKASKRSLKNEPS+ FQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESF+L
Subjt:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSF---PAQKASKRSLKNEPSIVFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSL

Query:  GAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLPQ
        G ELK VEDEVKTLEEEKL LLDELLVLEGLIDRSELQLA SNLPQ
Subjt:  GAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLPQ
TrEMBL top hitse value%identityAlignment
A0A0A0KMU4 Uncharacterized protein1.7e-6897.28Show/hide
Query:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSL
        MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP   AQKASKRSLKNEPS+VFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSL
Subjt:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSL

Query:  GAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLPQH
        GAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLPQH
Subjt:  GAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLPQH
A0A1S4DU11 uncharacterized protein LOC1034852043.6e-6393.84Show/hide
Query:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS
        MSRIDDLPYSRPPKQKALHQKASTASH+Q+KDPS+RIKGSFP   AQKASKRSLKNEPSIVFQQPERSNSDSLPD SSASGNEYRALRRKYLLLEEESF+
Subjt:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS

Query:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
        LGAELK VEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
Subjt:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
A0A5D3CLN1 Uncharacterized protein3.6e-6393.84Show/hide
Query:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS
        MSRIDDLPYSRPPKQKALHQKASTASH+Q+KDPS+RIKGSFP   AQKASKRSLKNEPSIVFQQPERSNSDSLPD SSASGNEYRALRRKYLLLEEESF+
Subjt:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS

Query:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
        LGAELK VEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
Subjt:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
A0A6J1GFB4 uncharacterized protein LOC1114536615.4e-5988.36Show/hide
Query:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS
        MSRIDDLP+SRPPKQKA HQKASTASH+Q KDP+DRIKGSFP   AQK+SKRSLKNEPS+  QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESFS
Subjt:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFP---AQKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS

Query:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
        LG ELK VEDEVK LEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
Subjt:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
A0A6J1ITW9 uncharacterized protein LOC1114783859.1e-5988.36Show/hide
Query:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPA---QKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS
        MSRIDDLPYSRPPKQKA H KASTASH+Q KDP+DRIKGSFPA   QK+SKRSLKNEPS+  QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESFS
Subjt:  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPA---QKASKRSLKNEPSIVFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFS

Query:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
        LG ELK VEDEVK LEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
Subjt:  LGAELKGVEDEVKTLEEEKLGLLDELLVLEGLIDRSELQLAHSNLP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G51500.1 unknown protein3.5e-1852.25Show/hide
Query:  STASHVQVKDPSDRIKGSFP--AQKASKRSLKNEPSIVFQQPERS-NSDSLPDSSASGNEYRALRRKYLLLEEESFSLGAELKGVEDEVKTLEEEKLGLL
        S A  +++  P   +    P   +K S RS  N+   +  Q E S NSDS P     GNEYRALRRKYLLLEE+SF+L  ELK  EDEVK LE+EKL LL
Subjt:  STASHVQVKDPSDRIKGSFP--AQKASKRSLKNEPSIVFQQPERS-NSDSLPDSSASGNEYRALRRKYLLLEEESFSLGAELKGVEDEVKTLEEEKLGLL

Query:  DELLVLEGLID
        D+L+V+EGL+D
Subjt:  DELLVLEGLID

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCGGATTGACGATTTACCATACTCTAGACCACCAAAACAGAAAGCTTTGCATCAAAAAGCTTCCACAGCATCTCATGTACAAGTGAAAGATCCCAGTGATCGAAT
TAAGGGGTCTTTTCCAGCACAGAAGGCTTCCAAAAGAAGTTTGAAAAATGAACCATCCATAGTGTTTCAGCAGCCCGAAAGGTCGAATTCGGATTCGTTGCCAGATTCAT
CTGCATCTGGGAATGAGTACCGTGCCTTAAGAAGAAAATACTTACTCCTAGAGGAAGAGAGCTTTAGTTTGGGAGCAGAACTGAAAGGAGTTGAAGATGAAGTAAAGACC
CTAGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTTCTTGTTTTAGAAGGACTAATCGATCGTTCAGAATTGCAGCTTGCCCATTCAAATTTACCACAACATTAG
mRNA sequenceShow/hide mRNA sequence
CCGCCACATTGTGGCAAAAATCAATAATTTCTCCCGAAAACGTGCCATTTTCCTTTCTCAAGTCTCTTTTATCTCTGAATTTCTACGCCACTTCGGTCGACAACTTTGTT
GGGGAAATTCATCGTCGACGGTCGTCTATGGCCATCTTCCGACGGCTTCAGCCATTCTAACCCTTTCTCAATTTCATCTCTAACCACAAGTTTGCTACTCTCCAGTACTG
TTTCCCTCTTGTAAAGATTTAAGGTCCCTCTTTTCAATCTCACTTGCCGATTACCTTTCTGGGTCTTTCACTCCTGAACGGGCTAATCGCTATCTCTTAGAGCCGCTGCA
GTGAGAAGCAGGACTGCACCGCCATGTCTCGGATTGACGATTTACCATACTCTAGACCACCAAAACAGAAAGCTTTGCATCAAAAAGCTTCCACAGCATCTCATGTACAA
GTGAAAGATCCCAGTGATCGAATTAAGGGGTCTTTTCCAGCACAGAAGGCTTCCAAAAGAAGTTTGAAAAATGAACCATCCATAGTGTTTCAGCAGCCCGAAAGGTCGAA
TTCGGATTCGTTGCCAGATTCATCTGCATCTGGGAATGAGTACCGTGCCTTAAGAAGAAAATACTTACTCCTAGAGGAAGAGAGCTTTAGTTTGGGAGCAGAACTGAAAG
GAGTTGAAGATGAAGTAAAGACCCTAGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTTCTTGTTTTAGAAGGACTAATCGATCGTTCAGAATTGCAGCTTGCCCATTCA
AATTTACCACAACATTAGTTACCTATGTTGCTAATTTTCTGCCTTTTGTGATGATAAGTAGAACTGGAAAAATATGTACAGTTTTGCCACAATATAAGAAAAAATGTTTA
ACCTTTTGAGCCATTGTATAGGTCGGGGGTTAACAAGACAAGAAAGGAAGCTTCTTTAATTTACTTCTTGAAAATGCTGTTTATGTAATTCTAAGTTTTATGATTAAATG
TGTTAATTTTTATTAGATTTGTGATAGTTTTATCAAATTACATACATTTAATGGATTGTTTTTAGC
Protein sequenceShow/hide protein sequence
MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPAQKASKRSLKNEPSIVFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSLGAELKGVEDEVKT
LEEEKLGLLDELLVLEGLIDRSELQLAHSNLPQH