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CSPI06G34180 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G34180
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLysM domain-containing protein
Genome locationChr6:28145976..28146592
RNA-Seq ExpressionCSPI06G34180
SyntenyCSPI06G34180
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG9449161.1 hypothetical protein H6P81_009126 [Aristolochia fimbriata]1.4e-1449.45Show/hide
Query:  MAKATISIAIFLLASSLLIFNIS-VKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCV
        MAKA++ + + +L  SL++F IS  +GR    +  + +A   L+CN A+GV+ GDTCF +A+AF LTT+ F+ +NPNLNC++LFV QWLCV
Subjt:  MAKATISIAIFLLASSLLIFNIS-VKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCV

KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]1.9e-4398.95Show/hide
Query:  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
        MAKATISIAIFLLASSLLIFNISVKGRNLF EVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Subjt:  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]6.5e-2365.62Show/hide
Query:  MAKATI--SIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL
        MAKA I  S  IFLLA SLLIF+ISV+ R+     VV EA LELQCNK YGVK+GDTCF + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKATI--SIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]2.0e-3281.05Show/hide
Query:  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
        MAKATI IAIFLLA  LLIF+ISVKG     EVV  E SLELQCNKAYGVKSGDTCFA+A  FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Subjt:  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]1.7e-3994.74Show/hide
Query:  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
        MAKATISIAIFLLASSLLIFNISVKG     EVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Subjt:  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein3.1e-2365.62Show/hide
Query:  MAKATI--SIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL
        MAKA I  S  IFLLA SLLIF+ISV+ R+     VV EA LELQCNK YGVK+GDTCF + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKATI--SIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL

A0A0A0KLD2 LysM domain-containing protein9.4e-4498.95Show/hide
Query:  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
        MAKATISIAIFLLASSLLIFNISVKGRNLF EVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Subjt:  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like9.7e-3381.05Show/hide
Query:  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
        MAKATI IAIFLLA  LLIF+ISVKG     EVV  E SLELQCNKAYGVKSGDTCFA+A  FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Subjt:  MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT

A0A6J5X2L6 LysM domain-containing protein7.7e-1451.14Show/hide
Query:  IAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
        I + L+ S LL+  ++ +G+ L   ++   A+  L+C  AYGVK+GDTCF IAQAF L T+ FD INPNLNC+ALFV QW+C+N  L+
Subjt:  IAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT

A0A803NLT8 Uncharacterized protein1.6e-1474.51Show/hide
Query:  CNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL
        CN  YGVK GDTCFA+ Q FKLTTD F  INPNLNC+ALFVSQWLCV+  L
Subjt:  CNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCTGTGAGGTTGTTGTGGAAGA
AGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCA
ATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCTGTGAGGTTGTTGTGGAAGA
AGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCA
ATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA
Protein sequenceShow/hide protein sequence
MAKATISIAIFLLASSLLIFNISVKGRNLFCEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT