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CSPI06G34190 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G34190
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLysM domain-containing protein
Genome locationChr6:28148000..28149023
RNA-Seq ExpressionCSPI06G34190
SyntenyCSPI06G34190
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]4.9e-2364.89Show/hide
Query:  AMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL
        A  + S  IFLLA SLLIF+ISV+ R+  FR VV  EA LELQCNK YGVK+GDTCF + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Subjt:  AMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]8.2e-4798.96Show/hide
Query:  QAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVLILP
        +AMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVLILP
Subjt:  QAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVLILP

XP_016560002.1 PREDICTED: uncharacterized protein LOC107859481 [Capsicum annuum]9.2e-1448.42Show/hide
Query:  FLLAFSLLIFSISVETRST------------PFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL
        FL+ FSLL++   VE++ T            P  G   A  E+ C KV  VKNGDTCFD+ +KF + +  FS INPNLNCT LF+GQWLC+D  L
Subjt:  FLLAFSLLIFSISVETRST------------PFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]2.7e-2164.29Show/hide
Query:  IFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL
        IFLLAF LLIFSISV+          E  LELQCNK YGVK+GDTCF L   FK++T HF+FINPNLNC+ LF+GQWLC++A L
Subjt:  IFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]1.2e-2161.96Show/hide
Query:  AMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL
        A  + S  IFLLA SLLIF+ISV+        V EA LELQCNK YGVK+GDTCF + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Subjt:  AMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein4.0e-4798.96Show/hide
Query:  QAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVLILP
        +AMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVLILP
Subjt:  QAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVLILP

A0A0A0KLD2 LysM domain-containing protein2.4e-2364.89Show/hide
Query:  AMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL
        A  + S  IFLLA SLLIF+ISV+ R+  FR VV  EA LELQCNK YGVK+GDTCF + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Subjt:  AMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like1.3e-2164.29Show/hide
Query:  IFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL
        IFLLAF LLIFSISV+          E  LELQCNK YGVK+GDTCF L   FK++T HF+FINPNLNC+ LF+GQWLC++A L
Subjt:  IFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL

A0A1U8FLA1 uncharacterized protein LOC1078594814.5e-1448.42Show/hide
Query:  FLLAFSLLIFSISVETRST------------PFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL
        FL+ FSLL++   VE++ T            P  G   A  E+ C KV  VKNGDTCFD+ +KF + +  FS INPNLNCT LF+GQWLC+D  L
Subjt:  FLLAFSLLIFSISVETRST------------PFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL

M1C1H7 LysM domain-containing protein9.9e-1448.19Show/hide
Query:  FLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL
        F+L  SLL+F   VE++ T   G      E++C+KV  VK+GDTCFD+   F + +  F+ INPNL CT LF+GQWLC+D  L
Subjt:  FLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGATGGGTGGGCAAGTTGTGGGTGGTTGAAACATCATCCATAGTACCATCCGCCTACACAGCTGAGGGCCGGCAGGCTATGATCTCCTCCTCATTTCCCATCTT
CCTATTGGCTTTCTCTCTTCTCATTTTCTCTATTTCTGTCGAAACTCGTTCTACTCCCTTCCGTGGGGTTGTTGAAGCTGGGTTGGAGTTACAATGCAACAAAGTTTATG
GAGTAAAGAATGGAGACACATGCTTTGATCTTGAACAGAAATTTAAGATCACCACTCCCCACTTCAGTTTCATCAATCCAAATCTCAATTGCACTGATCTTTTCATTGGC
CAATGGCTCTGTCTCGATGCTGTCCTTATCCTCCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGATGGGTGGGCAAGTTGTGGGTGGTTGAAACATCATCCATAGTACCATCCGCCTACACAGCTGAGGGCCGGCAGGCTATGATCTCCTCCTCATTTCCCATCTT
CCTATTGGCTTTCTCTCTTCTCATTTTCTCTATTTCTGTCGAAACTCGTTCTACTCCCTTCCGTGGGGTTGTTGAAGCTGGGTTGGAGTTACAATGCAACAAAGTTTATG
GAGTAAAGAATGGAGACACATGCTTTGATCTTGAACAGAAATTTAAGATCACCACTCCCCACTTCAGTTTCATCAATCCAAATCTCAATTGCACTGATCTTTTCATTGGC
CAATGGCTCTGTCTCGATGCTGTCCTTATCCTCCCTTAA
Protein sequenceShow/hide protein sequence
MDGWVGKLWVVETSSIVPSAYTAEGRQAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIG
QWLCLDAVLILP