; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G35320 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G35320
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description50S ribosomal protein L34, chloroplastic
Genome locationChr6:28770171..28772644
RNA-Seq ExpressionCSPI06G35320
SyntenyCSPI06G35320
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000271 - Ribosomal protein L34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134668.1 50S ribosomal protein L34, chloroplastic [Cucumis sativus]1.1e-72100Show/hide
Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_008439748.1 PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo]4.8e-6895.48Show/hide
Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_022142342.1 50S ribosomal protein L34, chloroplastic [Momordica charantia]1.2e-6188.39Show/hide
Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLSTPWV +GA+AVRVPSASLV STGSR  CSVSLNT NN SARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S++ VGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_023003306.1 50S ribosomal protein L34, chloroplastic-like [Cucurbita maxima]3.8e-5787.74Show/hide
Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISV+S+  VST    VRVPSASLVFSTGSR   S+SLNT NN SAR GLLHCSFLPSSSLSCSSSFSGLSLGLDWS K+GVGQGK R LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_038883793.1 50S ribosomal protein L34, chloroplastic [Benincasa hispida]2.6e-6693.55Show/hide
Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLS+PWVSTGA AVRVPSASLV STG RG CSVSLNT NN SARSGLLHCSFL SSSLSCSSSFSGLSLGLDWSSK+GVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

TrEMBL top hitse value%identityAlignment
A0A0A0KI92 Uncharacterized protein5.4e-73100Show/hide
Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A1S3AZG6 50S ribosomal protein L34, chloroplastic2.3e-6895.48Show/hide
Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A5D3CSJ7 50S ribosomal protein L342.3e-6895.48Show/hide
Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A6J1CMH5 50S ribosomal protein L34, chloroplastic5.6e-6288.39Show/hide
Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISVLSTPWV +GA+AVRVPSASLV STGSR  CSVSLNT NN SARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S++ VGQGKGR LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A6J1KNU0 50S ribosomal protein L34, chloroplastic-like1.9e-5787.74Show/hide
Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA
        MAAISV+S+  VST    VRVPSASLVFSTGSR   S+SLNT NN SAR GLLHCSFLPSSSLSCSSSFSGLSLGLDWS K+GVGQGK R LVVRAGKAA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

SwissProt top hitse value%identityAlignment
P82244 50S ribosomal protein L34, chloroplastic9.2e-3867.95Show/hide
Query:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFL-PSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKA
        MA +S+LST      AI  R PSASL F TGSR   +    + N  SARSG LHCSFL PSSSL  SS+FSGLSLGLD +S  GV   + R  VVRAGKA
Subjt:  MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFL-PSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKA

Query:  ALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        ALC TKR+RSRKSLARTHGFR RM TT+GRA+LKRRRAKGRK+LCTK+NPSSGKRA
Subjt:  ALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Q04CX6 50S ribosomal protein L348.7e-0470.59Show/hide
Query:  RKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVL
        ++ L R HGFR+RM T NGR VL RRRAKGRKVL
Subjt:  RKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVL

Q1I2H1 50S ribosomal protein L348.7e-0483.33Show/hide
Query:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL
        ARTHGFR RM T NGRAVL RRRAKGRK L
Subjt:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL

Q48BE9 50S ribosomal protein L348.7e-0483.33Show/hide
Query:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL
        ARTHGFR RM T NGRAVL RRRAKGRK L
Subjt:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL

Q9LP37 50S ribosomal protein L34, chloroplastic3.4e-3265.16Show/hide
Query:  AAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKV-GVGQGKGRGLVVRAGKAA
        +A S L  P  S G I   VPSASL   TG R   S SL     +SA S LLHCSFL SS +S +S FSGLS+  D SS+  G+   + RGLVVRAGKAA
Subjt:  AAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKV-GVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Arabidopsis top hitse value%identityAlignment
AT1G29070.1 Ribosomal protein L342.4e-3365.16Show/hide
Query:  AAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKV-GVGQGKGRGLVVRAGKAA
        +A S L  P  S G I   VPSASL   TG R   S SL     +SA S LLHCSFL SS +S +S FSGLS+  D SS+  G+   + RGLVVRAGKAA
Subjt:  AAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKV-GVGQGKGRGLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCGATATCAGTATTATCGACCCCATGGGTTTCCACCGGAGCCATTGCCGTCCGCGTTCCTTCAGCCTCTCTTGTATTCTCCACTGGTTCTAGAGGTTACTGCTC
CGTATCTCTGAACACCGTCAACAACAATTCTGCCCGTTCTGGACTGCTCCATTGTTCATTTCTTCCATCTTCCTCCCTCTCCTGCTCTTCATCTTTCTCAGGTTTATCTT
TGGGTTTGGATTGGAGCTCTAAGGTTGGGGTCGGACAAGGGAAGGGTCGGGGCTTAGTGGTCAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGA
AAATCCTTAGCTCGGACTCATGGGTTTCGCAGACGAATGAGAACCACCAATGGTAGAGCTGTTCTCAAACGCAGACGTGCCAAGGGTAGGAAGGTCCTGTGCACAAAATC
CAACCCCAGCAGTGGAAAGCGTGCTTAA
mRNA sequenceShow/hide mRNA sequence
TAAGGATCCTCCCTCATCCTCCGCTAGCAGAATTAGCTGAAAGAGGGAAACACACAGTAACAATGGCAGCGATATCAGTATTATCGACCCCATGGGTTTCCACCGGAGCC
ATTGCCGTCCGCGTTCCTTCAGCCTCTCTTGTATTCTCCACTGGTTCTAGAGGTTACTGCTCCGTATCTCTGAACACCGTCAACAACAATTCTGCCCGTTCTGGACTGCT
CCATTGTTCATTTCTTCCATCTTCCTCCCTCTCCTGCTCTTCATCTTTCTCAGGTTTATCTTTGGGTTTGGATTGGAGCTCTAAGGTTGGGGTCGGACAAGGGAAGGGTC
GGGGCTTAGTGGTCAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGAAAATCCTTAGCTCGGACTCATGGGTTTCGCAGACGAATGAGAACCACC
AATGGTAGAGCTGTTCTCAAACGCAGACGTGCCAAGGGTAGGAAGGTCCTGTGCACAAAATCCAACCCCAGCAGTGGAAAGCGTGCTTAAGTTTTTATCGCTTTAACCAT
TTGTAGGTTAATTAGGCGATGTTGTCTAATTCACTCTTCCAATGACCGGTCAAGGTAGCTCACTATATTACATGATGCTTTGTTATTGATTCATTTGAAAGTTTCTTAAT
TGTCAATGTTAAATTCAAATGTCTTGACGGAACAAGCTTATGTGATTGATGTGTTCGTATTCTTTTGAAAATCTCCTCTGATCCGAAATATGTACATCTTCTTAAAACCT
GAGGTTTGTATTTGTTGTTACTAACCTAATACTAGGCCTTCTCGTCATTCATTTTTAGGCCTGAAATCTGATTTGTAC
Protein sequenceShow/hide protein sequence
MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSR
KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA