; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G35890 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G35890
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr6:29059660..29059947
RNA-Seq ExpressionCSPI06G35890
SyntenyCSPI06G35890
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052578.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.9e-4490.53Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MPVKDLISWNSMLKGCLKCGD SMACNMF+KMSERNVVSWTTIINGLLEFGRVE+AECLF  MPTKDVAAWNSMV GFFSNGR++D IELFEKMP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

XP_008439681.1 PREDICTED: pentatricopeptide repeat-containing protein At5g46460, mitochondrial [Cucumis melo]3.9e-4490.53Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MPVKDLISWNSMLKGCLKCGD SMACNMF+KMSERNVVSWTTIINGLLEFGRVE+AECLF  MPTKDVAAWNSMV GFFSNGR++D IELFEKMP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

XP_011658273.1 pentatricopeptide repeat-containing protein At5g46460, mitochondrial isoform X1 [Cucumis sativus]1.5e-4390.53Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MPVKDLISWNSMLKGCLKCGD +MACNMF+KMSERNVVSWTTIINGLLEFGRVEVAECLF  MPTKDV AWNSMV GFFSNGRV+D IELFEKMP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

XP_031743943.1 pentatricopeptide repeat-containing protein At5g46460, mitochondrial isoform X2 [Cucumis sativus]1.5e-4390.53Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MPVKDLISWNSMLKGCLKCGD +MACNMF+KMSERNVVSWTTIINGLLEFGRVEVAECLF  MPTKDV AWNSMV GFFSNGRV+D IELFEKMP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

XP_038881432.1 pentatricopeptide repeat-containing protein At5g46460, mitochondrial [Benincasa hispida]1.3e-4491.58Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MPVKDLISWNSMLKGCLKCGD SMACNMFEKMSERNVVSWTTII+GLLEFGRVEVAE LFW MPTKDVAAWNSMV GFFSNGR++D IELFEKMP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

TrEMBL top hitse value%identityAlignment
A0A0A0KLU7 DYW_deaminase domain-containing protein7.2e-4490.53Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MPVKDLISWNSMLKGCLKCGD +MACNMF+KMSERNVVSWTTIINGLLEFGRVEVAECLF  MPTKDV AWNSMV GFFSNGRV+D IELFEKMP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

A0A1S3AZY7 pentatricopeptide repeat-containing protein At5g46460, mitochondrial1.9e-4490.53Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MPVKDLISWNSMLKGCLKCGD SMACNMF+KMSERNVVSWTTIINGLLEFGRVE+AECLF  MPTKDVAAWNSMV GFFSNGR++D IELFEKMP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

A0A5D3CMS7 Pentatricopeptide repeat-containing protein1.9e-4490.53Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MPVKDLISWNSMLKGCLKCGD SMACNMF+KMSERNVVSWTTIINGLLEFGRVE+AECLF  MPTKDVAAWNSMV GFFSNGR++D IELFEKMP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

A0A6J1CKH5 pentatricopeptide repeat-containing protein At5g46460, mitochondrial7.4e-4183.16Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MPVKDLISWNSMLKGCL CGD SMA NMF+KM ERNVVSWTTII+GLLEFGRVE+AE LFW MPT+DVAAWNSM+ G+FSNGRV+D  ELFEKMP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

A0A6J1KR12 pentatricopeptide repeat-containing protein At5g46460, mitochondrial1.7e-4081.05Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MPVKDL+SWNSMLKGCLKCGD SMA N+F+KM +RNV+SWTTII+GLLEFGRVEVAE  FW MPT+DVAAWNSMV G+FSNGRV+D +ELFEKMP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

SwissProt top hitse value%identityAlignment
O04590 Pentatricopeptide repeat-containing protein At1g62260, mitochondrial4.2e-1743.48Show/hide
Query:  KDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        K+++SWNSM+K  LK GD   A  +F++M +R+ +SW T+I+G +   R+E A  LF  MP +D  +WN MV G+ S G V+     FEK P
Subjt:  KDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

O64766 Pentatricopeptide repeat-containing protein At2g35030, mitochondrial4.1e-2042.11Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MP ++++SWNSM+K  ++ G    A N+FE+M  R+VVSWT +++GL + G+V+ A  LF  MP +++ +WN+M+ G+  N R+D+  +LF+ MP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

Q56XI1 Pentatricopeptide repeat-containing protein At1g09410, mitochondrial2.6e-2245.26Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MP +++ISWN ++ G +K G+   A  +F+ M ERNVVSWT ++ G +  G+V+VAE LFW+MP K+  +W  M+ GF  +GR+DD  +L+E +P
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

Q9FHF9 Pentatricopeptide repeat-containing protein At5g46460, mitochondrial1.3e-2954.74Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MPV+D++SWNSM+ GC++CGD + A  +F++M ER+VVSWT ++NG    G+V+ AE LF++MP KD AAWNSMV G+   G+VDD ++LF++MP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

Q9FXB9 Pentatricopeptide repeat-containing protein At1g56690, mitochondrial1.5e-1741.05Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        M  ++++SWN ++ G +K      A N+FE M ERNVVSWT ++ G ++ G V  AE LFWRMP ++  +W  M  G   +GR+D   +L++ MP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

Arabidopsis top hitse value%identityAlignment
AT1G09410.1 pentatricopeptide (PPR) repeat-containing protein1.8e-2345.26Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MP +++ISWN ++ G +K G+   A  +F+ M ERNVVSWT ++ G +  G+V+VAE LFW+MP K+  +W  M+ GF  +GR+DD  +L+E +P
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

AT1G56690.1 Pentatricopeptide repeat (PPR) superfamily protein1.0e-1841.05Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        M  ++++SWN ++ G +K      A N+FE M ERNVVSWT ++ G ++ G V  AE LFWRMP ++  +W  M  G   +GR+D   +L++ MP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

AT1G62260.1 mitochondrial editing factor 93.0e-1843.48Show/hide
Query:  KDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        K+++SWNSM+K  LK GD   A  +F++M +R+ +SW T+I+G +   R+E A  LF  MP +D  +WN MV G+ S G V+     FEK P
Subjt:  KDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein2.9e-2142.11Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MP ++++SWNSM+K  ++ G    A N+FE+M  R+VVSWT +++GL + G+V+ A  LF  MP +++ +WN+M+ G+  N R+D+  +LF+ MP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP

AT5G46460.1 Pentatricopeptide repeat (PPR) superfamily protein9.0e-3154.74Show/hide
Query:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP
        MPV+D++SWNSM+ GC++CGD + A  +F++M ER+VVSWT ++NG    G+V+ AE LF++MP KD AAWNSMV G+   G+VDD ++LF++MP
Subjt:  MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGTGAAGGATCTGATTTCATGGAATTCTATGCTCAAAGGGTGTCTCAAATGCGGGGATTCAAGTATGGCTTGTAACATGTTCGAAAAAATGTCTGAAAGGAATGT
TGTTTCTTGGACGACGATTATTAATGGGTTGCTGGAGTTTGGGAGAGTTGAGGTTGCTGAATGCTTGTTCTGGAGGATGCCCACTAAGGATGTAGCTGCCTGGAATTCAA
TGGTTCGTGGATTTTTTAGTAATGGTAGAGTTGATGATATTATAGAGTTGTTTGAGAAAATGCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGTGAAGGATCTGATTTCATGGAATTCTATGCTCAAAGGGTGTCTCAAATGCGGGGATTCAAGTATGGCTTGTAACATGTTCGAAAAAATGTCTGAAAGGAATGT
TGTTTCTTGGACGACGATTATTAATGGGTTGCTGGAGTTTGGGAGAGTTGAGGTTGCTGAATGCTTGTTCTGGAGGATGCCCACTAAGGATGTAGCTGCCTGGAATTCAA
TGGTTCGTGGATTTTTTAGTAATGGTAGAGTTGATGATATTATAGAGTTGTTTGAGAAAATGCCTTAA
Protein sequenceShow/hide protein sequence
MPVKDLISWNSMLKGCLKCGDSSMACNMFEKMSERNVVSWTTIINGLLEFGRVEVAECLFWRMPTKDVAAWNSMVRGFFSNGRVDDIIELFEKMP