; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G36020 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G36020
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA-binding protein
Genome locationChr6:29112161..29116152
RNA-Seq ExpressionCSPI06G36020
SyntenyCSPI06G36020
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR002836 - PDCD5-like
IPR036883 - PDCD5-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439666.1 PREDICTED: DNA-binding protein DDB_G0278111 [Cucumis melo]1.5e-54100Show/hide
Query:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

XP_022925641.1 DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita moschata]1.8e-5296.06Show/hide
Query:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        +DPELEAIRQRRMQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

XP_022925642.1 DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita moschata]1.8e-5296.06Show/hide
Query:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        +DPELEAIRQRRMQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

XP_031744105.1 DNA-binding protein DDB_G0278111 isoform X1 [Cucumis sativus]3.2e-57100Show/hide
Query:  MKCANDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEER
        MKCANDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEER
Subjt:  MKCANDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEER

Query:  LITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        LITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LITLLEQINNQTTKQTKVTIQRRRSVLEDDD

XP_038881892.1 DNA-binding protein DDB_G0278111 [Benincasa hispida]1.3e-5398.43Show/hide
Query:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        +DPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

TrEMBL top hitse value%identityAlignment
A0A0A0KKK2 Uncharacterized protein1.6e-57100Show/hide
Query:  MKCANDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEER
        MKCANDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEER
Subjt:  MKCANDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEER

Query:  LITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        LITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LITLLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A1S3AZB0 DNA-binding protein DDB_G02781117.3e-55100Show/hide
Query:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1ECS1 DNA-binding protein DDB_G0278111-like isoform X18.9e-5396.06Show/hide
Query:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        +DPELEAIRQRRMQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1IUM6 DNA-binding protein DDB_G0278111-like isoform X18.9e-5396.06Show/hide
Query:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        +DPELEAIRQRRMQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1IVC3 DNA-binding protein DDB_G0278111-like isoform X28.9e-5396.06Show/hide
Query:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        +DPELEAIRQRRMQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  NDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

SwissProt top hitse value%identityAlignment
O13929 Uncharacterized protein C23C4.09c1.4e-1544.09Show/hide
Query:  DPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL
        D EL+AIRQ R+ +L A+ G    N      + ++ +   +E RQ +LSQIL   AR+RL RIALV+ ++A  VE+++LR A+ GQI  K+SE  LI LL
Subjt:  DPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL

Query:  EQINNQTTK--QTKVTIQRRRSVLEDD
        E+I+ + +K  +TK+ I RR    EDD
Subjt:  EQINNQTTK--QTKVTIQRRRSVLEDD

O14737 Programmed cell death protein 58.4e-1642.86Show/hide
Query:  DPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL
        D ELEA+R++R+ EL A+ G           AQ+EA+    E R  +L+Q+L   AR RLS +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L
Subjt:  DPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL

Query:  EQINNQTTKQTKVTIQRRRSVLEDDD
        ++++ QT K T V   RR+ +  D+D
Subjt:  EQINNQTTKQTKVTIQRRRSVLEDDD

P56812 Programmed cell death protein 58.4e-1642.86Show/hide
Query:  DPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL
        D ELEA+R++R+ EL A+ G           AQ+EA+    E R  +L+Q+L   AR RLS +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +L
Subjt:  DPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL

Query:  EQINNQTTKQTKVTIQRRRSVLEDDD
        E+++ QT K+T V   RR+ +  D+D
Subjt:  EQINNQTTKQTKVTIQRRRSVLEDDD

Q54YS0 DNA-binding protein DDB_G02781114.8e-1953.51Show/hide
Query:  QELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTK
        Q+L   +G G   +PE Q+ QE  R EA ERRQ +L QIL+  ARERLSRI +VKPEK+R +ED+I+RAAQ GQ+ E+V + +LI+LLEQ+ ++ TK+T 
Subjt:  QELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTK

Query:  VTIQRRRSVLEDDD
        +T++RR   +EDDD
Subjt:  VTIQRRRSVLEDDD

Q5RBT0 Programmed cell death protein 58.4e-1642.86Show/hide
Query:  DPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL
        D ELEA+R++R+ EL A+ G           AQ+EA+    E R  +L+Q+L   AR RLS +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L
Subjt:  DPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL

Query:  EQINNQTTKQTKVTIQRRRSVLEDDD
        ++++ QT K T V   RR+ +  D+D
Subjt:  EQINNQTTKQTKVTIQRRRSVLEDDD

Arabidopsis top hitse value%identityAlignment
AT1G29850.1 double-stranded DNA-binding family protein4.7e-4682.95Show/hide
Query:  DPELEAIRQRRMQELMAQRGM---GSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI
        DPELEAIRQRRMQELMA++GM   G+Q NPEQ+K QE+A+ EA+ERRQMMLSQ+LS QARER++RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI
Subjt:  DPELEAIRQRRMQELMAQRGM---GSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI

Query:  TLLEQINNQTTKQTKVTIQRRRSVLEDDD
        TLLEQIN+QTTKQTKVT QRRR V  DDD
Subjt:  TLLEQINNQTTKQTKVTIQRRRSVLEDDD

AT1G29850.2 double-stranded DNA-binding family protein6.1e-4682.31Show/hide
Query:  DPELEAIRQRRMQELMAQRGM----GSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERL
        DPELEAIRQRRMQELMA++GM    G+Q NPEQ+K QE+A+ EA+ERRQMMLSQ+LS QARER++RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERL
Subjt:  DPELEAIRQRRMQELMAQRGM----GSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERL

Query:  ITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        ITLLEQIN+QTTKQTKVT QRRR V  DDD
Subjt:  ITLLEQINNQTTKQTKVTIQRRRSVLEDDD

AT1G29850.3 double-stranded DNA-binding family protein1.3e-4380.65Show/hide
Query:  DPELEAIRQRRMQELMAQRGM---GSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI
        DPELEAIRQRRMQELMA++GM   G+Q NPEQ+K QE+A+ EA+ERRQMMLSQ+LS QARER++RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI
Subjt:  DPELEAIRQRRMQELMAQRGM---GSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI

Query:  TLLEQINNQTTKQTKVTIQRRRSV
        TLLEQIN+QTTKQTKVT+    +V
Subjt:  TLLEQINNQTTKQTKVTIQRRRSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTGCGCCAATGATCCAGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGGAGCCAAAATAATCCTGAACAACAGAAGGC
CCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGTAGGCAAATGATGCTGAGTCAGATTCTGTCAATGCAAGCCAGAGAAAGACTTTCTCGAATTGCATTGGTTAAACCTG
AGAAGGCACGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGGCAAATTGTAGAGAAGGTCTCTGAAGAGAGGCTTATTACATTGCTAGAACAAATCAACAAT
CAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGCGTTCTAGAAGATGACGATTAG
mRNA sequenceShow/hide mRNA sequence
ATTCATTCGAACTACGGTGAATTCAATGCGGAGTTCTCCGTTTTGCTTCAGTAATATTTATTCCGCTCCTAATTAGGGGTTTATCTTTTATGTAAAGTGTTTTTTTTTTC
TTGTGTTCGTCCTTAAATAGTAAATTAGTAATTGTATTTGCACGTACAAGAATTCTTAGAATTAGGTTTTTCGATATCCGTGGGTGTCCGGACAACCCACTGAGCCTACC
ACATCTGGGCGTCAAGGAAACACCTCGAAAATTAAATTGTTAAGTAGGTGACCACCGTGATTAAATTAGATTCTGATAGTCCATTTCCAGGTGAAATATGTGAGCCACTA
TATCTATAGAGTATAGACAAGCTGAAGCGCACTCTACGCATTGAGTAGTTGGTGGTTTTTGGATTTGAGAAATATTTATGTGATAAATTTATGTTCACGAATCACGCTGC
AGTTTGTGCTAAATGAAGTGCGCCAATGATCCAGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGGAGCCAAAATAATCCTGA
ACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGTAGGCAAATGATGCTGAGTCAGATTCTGTCAATGCAAGCCAGAGAAAGACTTTCTCGAATTGCAT
TGGTTAAACCTGAGAAGGCACGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGGCAAATTGTAGAGAAGGTCTCTGAAGAGAGGCTTATTACATTGCTAGAA
CAAATCAACAATCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGCGTTCTAGAAGATGACGATTAGCAAGTGAGATGAATTGCATACCTTATATGATA
TAATGCATATACCAGCAGTCTTGGTTGTATGTTTATTGCTCGCGTGATACAGTATCTACCTTTTTATCTATTACTCTGCTGCGTTATTTTATGGGGATATTCTCACGTCA
GAATGCTAGAGCTCCTCGGAGTTAGCTGTTATTACTCCATTGTTGCGGCTATATTTGCCAAACTATTAAGTACCAACCTTGAAATATTATTTTACTTTCTAATTTGTGAT
TGTTAAAGTGGAATTGATTTTCTTTCAATTCTGAGTGTGAGTGTTTTAATCTAGAGATTGATCTGATCTGTCGCTGTTTGATGCAATCCACACAAATTTGAAACCATTGA
ATGCAGC
Protein sequenceShow/hide protein sequence
MKCANDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINN
QTTKQTKVTIQRRRSVLEDDD