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CSPI06G36450 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G36450
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionE3 ubiquitin-protein ligase arkadia-A, putative
Genome locationChr6:29379255..29380049
RNA-Seq ExpressionCSPI06G36450
SyntenyCSPI06G36450
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052530.1 putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]2.2e-6196.18Show/hide
Query:  MNLTATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF
        MNL  TTTMED H+LQNIPSFKLSRYSSSARDSDA DDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF
Subjt:  MNLTATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF

Query:  WERLRIKLAALRSRWCDCFHRIFGFFSFALD
        WERLRIKLAALRSRWCDCFHRIFGFFSFALD
Subjt:  WERLRIKLAALRSRWCDCFHRIFGFFSFALD

KAE8647751.1 hypothetical protein Csa_003767 [Cucumis sativus]2.3e-55100Show/hide
Query:  MEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKL
        MEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKL
Subjt:  MEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKL

Query:  AALRSRWCDCFHR
        AALRSRWCDCFHR
Subjt:  AALRSRWCDCFHR

XP_022925985.1 uncharacterized protein LOC111433238 [Cucurbita moschata]5.7e-5486.82Show/hide
Query:  MNLTA-TTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG
        MNLT  TT M+DPH+LQN+PSFKLSRYSS+ RDSDA DDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVG
Subjt:  MNLTA-TTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG

Query:  FWERLRIKLAALRSRWCDCFHRIFGFFSF
        FWERLRIKLAALRSRWCDCF R FGFF F
Subjt:  FWERLRIKLAALRSRWCDCFHRIFGFFSF

XP_022977989.1 uncharacterized protein LOC111478115 [Cucurbita maxima]1.5e-5486.92Show/hide
Query:  MNLTA-TTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG
        MNLT  T TM+DPH+LQN+PSFKLSRYSS+ RDSDA DDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVG
Subjt:  MNLTA-TTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG

Query:  FWERLRIKLAALRSRWCDCFHRIFGFFSFA
        FWERLRIKLAALRSRWCDCF R FGFF FA
Subjt:  FWERLRIKLAALRSRWCDCFHRIFGFFSFA

XP_023544918.1 uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo]1.5e-5486.92Show/hide
Query:  MNLTA-TTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG
        MNLT  TT M+DPH+LQN+PSFKLSRYSS+ RDSDA DDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVG
Subjt:  MNLTA-TTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG

Query:  FWERLRIKLAALRSRWCDCFHRIFGFFSFA
        FWERLRIKLAALRSRWCDCF R FGFF FA
Subjt:  FWERLRIKLAALRSRWCDCFHRIFGFFSFA

TrEMBL top hitse value%identityAlignment
A0A0A0KKP9 Uncharacterized protein5.4e-66100Show/hide
Query:  MNLTATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF
        MNLTATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF
Subjt:  MNLTATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF

Query:  WERLRIKLAALRSRWCDCFHRIFGFFSFALD
        WERLRIKLAALRSRWCDCFHRIFGFFSFALD
Subjt:  WERLRIKLAALRSRWCDCFHRIFGFFSFALD

A0A5A7UBK0 Putative E3 ubiquitin-protein ligase arkadia-A1.0e-6196.18Show/hide
Query:  MNLTATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF
        MNL  TTTMED H+LQNIPSFKLSRYSSSARDSDA DDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF
Subjt:  MNLTATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF

Query:  WERLRIKLAALRSRWCDCFHRIFGFFSFALD
        WERLRIKLAALRSRWCDCFHRIFGFFSFALD
Subjt:  WERLRIKLAALRSRWCDCFHRIFGFFSFALD

A0A6J1CYB8 uncharacterized protein LOC1110157121.1e-4288.79Show/hide
Query:  TMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIK
        T+ + H+LQNIPSFKLSRYSS ARDSDA DDLRY SLKDILLNSPSYSGVNDFN+FNSSNISIRNELVKRAASAYLQSAAILVSRNES FV FWERLR K
Subjt:  TMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIK

Query:  LAALRSR
        LAALRSR
Subjt:  LAALRSR

A0A6J1EJR7 uncharacterized protein LOC1114332382.8e-5486.82Show/hide
Query:  MNLTA-TTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG
        MNLT  TT M+DPH+LQN+PSFKLSRYSS+ RDSDA DDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVG
Subjt:  MNLTA-TTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG

Query:  FWERLRIKLAALRSRWCDCFHRIFGFFSF
        FWERLRIKLAALRSRWCDCF R FGFF F
Subjt:  FWERLRIKLAALRSRWCDCFHRIFGFFSF

A0A6J1ISV4 uncharacterized protein LOC1114781157.3e-5586.92Show/hide
Query:  MNLTA-TTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG
        MNLT  T TM+DPH+LQN+PSFKLSRYSS+ RDSDA DDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVG
Subjt:  MNLTA-TTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG

Query:  FWERLRIKLAALRSRWCDCFHRIFGFFSFA
        FWERLRIKLAALRSRWCDCF R FGFF FA
Subjt:  FWERLRIKLAALRSRWCDCFHRIFGFFSFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18395.1 unknown protein2.5e-0735.78Show/hide
Query:  DSDASDDLRYTSLKDILLNS---------PSYSGVND----FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDC
        D +  ++L+YTSLKD++ +S         P YS  +      +E +SSNI+I NELVKRAAS Y+QS+ I+++ + + F  F   L+ K  A+ +   DC
Subjt:  DSDASDDLRYTSLKDILLNS---------PSYSGVND----FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDC

Query:  FHRIFGFFS
           +   F+
Subjt:  FHRIFGFFS

AT5G06280.1 unknown protein2.0e-0433.33Show/hide
Query:  NLTATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRN
        N+T  T  E P  + + P    S +         S  + YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S +
Subjt:  NLTATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRN

Query:  ESGFVGFWERLRIKLAA
        +S    F+ R+ + L+A
Subjt:  ESGFVGFWERLRIKLAA

AT5G06280.3 unknown protein2.0e-0433.33Show/hide
Query:  NLTATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRN
        N+T  T  E P  + + P    S +         S  + YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S +
Subjt:  NLTATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRN

Query:  ESGFVGFWERLRIKLAA
        +S    F+ R+ + L+A
Subjt:  ESGFVGFWERLRIKLAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTAACAGCAACAACAACAATGGAAGACCCTCATAGGCTTCAGAACATACCTTCTTTCAAATTGTCCCGTTATTCCTCCAGCGCCAGAGACTCCGATGCCAGCGA
TGACCTCCGATATACTAGCTTGAAAGACATTCTTCTGAATTCCCCGTCGTACAGCGGCGTAAATGATTTCAACGAATTCAATTCGTCAAATATTTCGATCAGAAACGAGC
TGGTGAAAAGAGCGGCCTCGGCCTACCTTCAATCGGCCGCGATTTTGGTCAGCCGGAATGAAAGCGGTTTCGTCGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCC
CTCCGTTCCCGTTGGTGTGATTGTTTTCACCGTATTTTTGGCTTCTTTAGTTTTGCCTTAGACTAA
mRNA sequenceShow/hide mRNA sequence
TAGAATATATATATAAAAGTATAAGTTGAATTTGTGCGTAACAAACAATTGAATCATTCATTTTTCCTCCCACCAAATTCTCACTTTTGGCCGCATCTTAATGAATACAT
AAACTCTGAGATCCATCCATAGCCTCAATTGGCCGATTCAATCTCCTAATTCCATGGAATCTTCAACAAATCCAACCCCTTTTTCTTTCTACACCATTAACAAATTCCCA
CACAATCAAAATCAAATTCCACAATCTCTAACCAATAAAGAACAAAACAACCAAGGAAAACCAAAATTGGGCTCCAAAACCCTAAAACCACCTTTAATGGCTATGATCCA
CACAGAAAATCTCTGTTAATGAATTTAACAGCAACAACAACAATGGAAGACCCTCATAGGCTTCAGAACATACCTTCTTTCAAATTGTCCCGTTATTCCTCCAGCGCCAG
AGACTCCGATGCCAGCGATGACCTCCGATATACTAGCTTGAAAGACATTCTTCTGAATTCCCCGTCGTACAGCGGCGTAAATGATTTCAACGAATTCAATTCGTCAAATA
TTTCGATCAGAAACGAGCTGGTGAAAAGAGCGGCCTCGGCCTACCTTCAATCGGCCGCGATTTTGGTCAGCCGGAATGAAAGCGGTTTCGTCGGATTCTGGGAGAGGCTT
AGGATCAAACTCGCCGCCCTCCGTTCCCGTTGGTGTGATTGTTTTCACCGTATTTTTGGCTTCTTTAGTTTTGCCTTAGACTAAGAACATCATTAGACCCCTTCCTCTAT
TTTTTTTTTCCTTCTAATTTTGTTT
Protein sequenceShow/hide protein sequence
MNLTATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA
LRSRWCDCFHRIFGFFSFALD