; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G37320 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G37320
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRRM domain-containing protein
Genome locationChr6:29962598..29965810
RNA-Seq ExpressionCSPI06G37320
SyntenyCSPI06G37320
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134540.1 glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus]1.2e-8599.37Show/hide
Query:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWATTVSFPSVSN+RGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
Subjt:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
        LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
Subjt:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY

XP_008439484.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]6.4e-7689.87Show/hide
Query:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWATTVS PS+SN+RGP+FPNN LVASNR SLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
Subjt:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
        LALE MDCKIFDGR IYVEIA PGSGSFGGYPR SGPPKERP    NV+QED+ADCWY
Subjt:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY

XP_022977992.1 small RNA-binding protein 11, chloroplastic [Cucurbita maxima]4.3e-6481.01Show/hide
Query:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWA TVSFPS+SN+RGPI  NNRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAM
Subjt:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
        LALE MDCK FDGR IYVE+A PGSGSFGGYP  SGPPKERP  +  +  E+VADCWY
Subjt:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY

XP_023543104.1 small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo]3.6e-6380.38Show/hide
Query:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWA TVSFPS+SN+RGPI  NNRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAM
Subjt:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
        LALE MDCK FDGR IYVE+A PGSGSF GYP  SGPPKERP  +  +  E+VADCWY
Subjt:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY

XP_038883016.1 organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida]1.1e-6271.35Show/hide
Query:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVR--------------------NLPYSTNESRLQEEFSNFGEIAEVLLAKDR
        MWA TVSFPS+SN+RGPI PNNR   S R SLN RASF DYPLASRL+VR                    +LPYST ESRLQEEFSNFGEIAEVLLAKD+
Subjt:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVR--------------------NLPYSTNESRLQEEFSNFGEIAEVLLAKDR

Query:  STKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
         TKRPKGYAFIQYTCQDDAMLALE MDCK FDGRMIYVE+A PGS SFGGYPR SGPPKERP     V+ ++VADCWY
Subjt:  STKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY

TrEMBL top hitse value%identityAlignment
A0A0A0KL21 RRM domain-containing protein5.6e-8699.37Show/hide
Query:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWATTVSFPSVSN+RGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
Subjt:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
        LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
Subjt:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY

A0A1S3AYG0 glycine-rich RNA-binding protein 4, mitochondrial3.1e-7689.87Show/hide
Query:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWATTVS PS+SN+RGP+FPNN LVASNR SLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
Subjt:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
        LALE MDCKIFDGR IYVEIA PGSGSFGGYPR SGPPKERP    NV+QED+ADCWY
Subjt:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY

A0A6J1CXC0 glycine-rich RNA-binding protein 4, mitochondrial2.0e-5974.68Show/hide
Query:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWA+TVSFP + N R PI  +N    + R SLNLRASFFDYPLASR+MVRNLPYST+E RLQEEFS+FGE+AEVLLAKDR TKRP+GYAFIQYTCQDDAM
Subjt:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
        LALE MD K FDGR IYVE+A PGS SFGGYPR SGPPKERP     ++ E+VADCWY
Subjt:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY

A0A6J1EGU7 small RNA-binding protein 11, chloroplastic6.7e-6379.75Show/hide
Query:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWA TVSFPS+SN+RGPI  +NRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAM
Subjt:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
        LALE MDCK FDGR IYVE+A PGSGSF GYP  SGPPKERP  +  +  E+VADCWY
Subjt:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY

A0A6J1IJY1 small RNA-binding protein 11, chloroplastic2.1e-6481.01Show/hide
Query:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWA TVSFPS+SN+RGPI  NNRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAM
Subjt:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
        LALE MDCK FDGR IYVE+A PGSGSFGGYP  SGPPKERP  +  +  E+VADCWY
Subjt:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY

SwissProt top hitse value%identityAlignment
Q4WJT7 Multiple RNA-binding domain-containing protein 13.0e-1245Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIAT
        L+SRL VRNLPY  +ES L+  FS FG+I E+ +A D  +   KG+A++QY   D A+ A + +D K F GR++++  AT
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIAT

Q54PB2 Multiple RNA-binding domain-containing protein 11.4e-1246.67Show/hide
Query:  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYV
        + R+ VRNL YST E  L++ FS FG+I+E+ +  D  +K+ KG AFI Y   ++A+ AL  MD K+F GR+I+V
Subjt:  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYV

Q9DED4 Cold-inducible RNA-binding protein B2.3e-1242.53Show/hide
Query:  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGSGS-FGGY
        +L +  L + TNE  L++ FS +G+I+EV++ KDR TKR +G+ F+ +   DDA  A+  M+ K  DGR I V+ A   SG   GGY
Subjt:  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGSGS-FGGY

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial8.0e-1339.13Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGS----GSFGG
        ++S+L V  L + T++S L++ F++FGE+ E  +  DR T R +G+ F+ ++C+D A  A++ MD K  +GR I V +AT  S     SFGG
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGS----GSFGG

W8E7I1 RNA-binding protein 32.3e-1238.38Show/hide
Query:  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGS-----GSFGGYPRASGPPK
        +L V  L ++T+E  L++ FS+FG I+EV++ KDR T+R +G+ FI +T  + A  A+  M+ +  DGR I V+ A   +     G+FG Y R  G P+
Subjt:  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGS-----GSFGGYPRASGPPK

Arabidopsis top hitse value%identityAlignment
AT3G23830.1 glycine-rich RNA-binding protein 45.7e-1439.13Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGS----GSFGG
        ++S+L V  L + T++S L++ F++FGE+ E  +  DR T R +G+ F+ ++C+D A  A++ MD K  +GR I V +AT  S     SFGG
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGS----GSFGG

AT3G23830.2 glycine-rich RNA-binding protein 45.7e-1439.13Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGS----GSFGG
        ++S+L V  L + T++S L++ F++FGE+ E  +  DR T R +G+ F+ ++C+D A  A++ MD K  +GR I V +AT  S     SFGG
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGS----GSFGG

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.6e-1444.3Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIA
        ++++L V  L   T +  L++ FS FG+I E  L +D  T+RPKG+ FI +  +DDA  AL+++D KI DGR+I+VE+A
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIA

AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.8e-4355.62Show/hide
Query:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MW+ T+SFPS       + PN R +   +I    +AS F+YPLAS++MVRNLP+ST+E  L+ EFS FGEIAEV L KD + KR KGYAFIQ+T QDDA 
Subjt:  MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPK--ERPNERANVDQEDVADCWY
        LA+ETMD ++++GRMIY++IA PG   F G PR SGPP+  + P E AN   ++VADCWY
Subjt:  LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPK--ERPNERANVDQEDVADCWY

AT5G08695.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.7e-1439.22Show/hide
Query:  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPN
        A RL V  LPYST E  L E FS FG+I+EV L  D+ T+  +G AF+ Y   + A +A++ +D   F GR +++  A P + S      +S  PK    
Subjt:  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPN

Query:  ER
        ER
Subjt:  ER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCGACCACCGTCTCCTTCCCTTCAGTTTCAAATATTCGGGGACCCATTTTTCCGAATAATCGACTTGTCGCTTCCAATCGCATATCTCTGAATCTTCGAGCTTC
TTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTCTCGAATTTTGGTGAGATTGCTGAAG
TGTTATTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGTTACGCATTTATTCAATACACGTGCCAAGACGATGCGATGCTCGCTCTGGAAACTATGGATTGCAAGATA
TTTGATGGAAGGATGATCTATGTTGAAATTGCAACACCTGGTAGTGGTTCCTTTGGAGGATATCCAAGAGCCTCTGGACCCCCAAAAGAGCGGCCTAATGAGCGGGCTAA
CGTGGATCAAGAAGATGTGGCAGATTGTTGGTATTGA
mRNA sequenceShow/hide mRNA sequence
GAAATTTTGAGATAGTTGTATAATTTAATCTATTAAGATTAAAAATGTATATTTTTAAAATTTAGGAACCAAAAGCAGAAGTAGTTTTCCTAAAATTAAAACTGTTCGGT
GTTATGAAAATAAGAAGCCGCGAATTCGGGTTTTGAGGTGCGATCGATCGATCGAACGAACGAAGCTCCAGGGCGTTGACTGAGCAGATTTGAGCGCCAATATGTGGGCG
ACCACCGTCTCCTTCCCTTCAGTTTCAAATATTCGGGGACCCATTTTTCCGAATAATCGACTTGTCGCTTCCAATCGCATATCTCTGAATCTTCGAGCTTCTTTCTTTGA
TTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTCTCGAATTTTGGTGAGATTGCTGAAGTGTTATTAG
CAAAAGATCGATCAACAAAAAGACCAAAAGGTTACGCATTTATTCAATACACGTGCCAAGACGATGCGATGCTCGCTCTGGAAACTATGGATTGCAAGATATTTGATGGA
AGGATGATCTATGTTGAAATTGCAACACCTGGTAGTGGTTCCTTTGGAGGATATCCAAGAGCCTCTGGACCCCCAAAAGAGCGGCCTAATGAGCGGGCTAACGTGGATCA
AGAAGATGTGGCAGATTGTTGGTATTGATCTTCCTTTTTCTGAGAAGCAAAATATTTATATAGGAAAGAGATGGCTTGACAGTTAATGACAGTTATGCCCAAGGAGATTT
AGATCAATTTCAAAGAATCAATGAGTGCTGAAGTGTTTGCTGAGATGGATTCATTACATCTATCTTCGAAGTTCCAAGCGTTAGATGCTGATAAGATTGTGAAACTCTTC
TCTTGTATTTTGTAACAGGAACAAAATATCTGTATTTGTAAATACACTGTTTAGGACACTTGACTGCATCTCCCAGTGCGTATTGCTTTTTGTAGCGTTGCAATTCAGAT
TGTGGCGAATGCGGAAATTCGTAATTACCTTTACAAGTCCTTTTTTTTAAAGAAAAATTCCTTATCCAATAATCAGTTTCCAAATTTAAAGTGCC
Protein sequenceShow/hide protein sequence
MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKI
FDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY