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CSPI07G00010 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G00010
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein RADIALIS-like 3
Genome locationChr7:24743..26922
RNA-Seq ExpressionCSPI07G00010
SyntenyCSPI07G00010
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055424.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa]3.1e-4193.55Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYL
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEILLEDLR+IESGRVPIPNYR TSNRDEELRL+K +
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYL

KGN43156.2 hypothetical protein Csa_020475 [Cucumis sativus]1.1e-41100Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELR
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELR
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELR

XP_004151090.1 protein RADIALIS-like 3 [Cucumis sativus]4.2e-46100Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ

XP_008447023.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]7.9e-4597.92Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ

XP_038888995.1 protein RADIALIS-like 3 isoform X1 [Benincasa hispida]2.6e-4089.58Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERW NIA AVGGKS DEV+RHYE+LLEDLRRIESGRVPIPNYR   NRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0K2A2 SANT domain-containing protein2.0e-46100Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ

A0A1S3BHB0 protein RADIALIS-like 33.8e-4597.92Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ

A0A5D3DF44 Protein RADIALIS-like 31.5e-4193.55Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYL
        MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEILLEDLR+IESGRVPIPNYR TSNRDEELRL+K +
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYL

A0A6J1GKW1 protein RADIALIS-like 34.1e-3988.54Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEILLEDL RIESGRVPIPNYR   N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ

A0A6J1ICR6 protein RADIALIS-like 39.2e-3987.5Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+ PERW NIA AVGGKSADEV+RHYEILLEDL+RIESGRVPIPNYR   N DEELRLLKYLKLQ
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.0e-2252.48Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRR----TSNR-DEELRLLKYLKL
        MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ +EV+RHYE+L++D+  IE+G VP PNYR     T+ R  +E + ++ ++L
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRR----TSNR-DEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q

Q1A173 Protein RADIALIS-like 65.2e-2355Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYR-----RTSNRDEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL+EDL  IE+GRVP+PNY+       S  D + R +K LK+
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYR-----RTSNRDEELRLLKYLKL

Q58FS3 Transcription factor RADIALIS4.9e-2154.22Show/hide
Query:  WTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRT-SNRDEELRLLKYLKLQ
        W+ K+NK FE+ALA+YDKDTP+RW N+A AV G++ +EV++HYEIL+ED++ IESG+VP PNYR T  N   + +  + LK++
Subjt:  WTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRT-SNRDEELRLLKYLKLQ

Q6NNN0 Protein RADIALIS-like 35.2e-2360.98Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSN
        MAS+S+       +WT K+NKLFE+ALA YD+DTP+RW N+A AVGGKSA+EV+RHYE+L+ D+  IESGR P PNYR   N
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSN

Q8GW75 Protein RADIALIS-like 51.0e-2354.37Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRR----TSNR---DEELRLLKYL
        MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSA+EV+RHY+IL+EDL  IE   VP+P Y+     + +R   D +LRL+K +
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRR----TSNR---DEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 57.5e-2554.37Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRR----TSNR---DEELRLLKYL
        MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSA+EV+RHY+IL+EDL  IE   VP+P Y+     + +R   D +LRL+K +
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRR----TSNR---DEELRLLKYL

Query:  KLQ
        ++Q
Subjt:  KLQ

AT1G75250.1 RAD-like 61.1e-2354.55Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYR------RTSNRDEELRLLKYL
        MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL+EDL  IE+GRVP+PNY+      R+ N  +   + KYL
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYR------RTSNRDEELRLLKYL

AT1G75250.2 RAD-like 63.7e-2455Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYR-----RTSNRDEELRLLKYLKL
        MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL+EDL  IE+GRVP+PNY+       S  D + R +K LK+
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYR-----RTSNRDEELRLLKYLKL

AT2G18328.1 RAD-like 41.3e-2159.26Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTS
        MASSS+      ++WT +++K FE ALA +DKDTP+RWQ IA AVGGKS +EV+RHYE+LL D+  IESGR P P YR T+
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTS

AT4G39250.1 RAD-like 11.4e-2352.48Show/hide
Query:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRR----TSNR-DEELRLLKYLKL
        MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ +EV+RHYE+L++D+  IE+G VP PNYR     T+ R  +E + ++ ++L
Subjt:  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRR----TSNR-DEELRLLKYLKL

Query:  Q
        Q
Subjt:  Q


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGAGCTCTTTGAAGCAGCAACGACCAGAGACGACATGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACACCTGAGAG
ATGGCAAAATATCGCCACTGCAGTAGGCGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGACCTCCGGCGGATCGAGTCCGGTCGTGTTCCTA
TTCCCAATTACCGACGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTGAAGTATCTGAAGCTTCAATGA
mRNA sequenceShow/hide mRNA sequence
CTTGCTTCCTATATTTCATATATAAATCTCTCTCATTTTTCTCCTTTACATCTCCCCAAGAAGAAAAAAAATTCCATTTCTTTCCAATGGCTTCGAGCTCTTTGAAGCAG
CAACGACCAGAGACGACATGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACACCTGAGAGATGGCAAAATATCGCCACTGCAGT
AGGCGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGACCTCCGGCGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGACGCACTAGCA
ATCGAGATGAAGAGTTGAGGCTGTTGAAGTATCTGAAGCTTCAATGAAGAACTTGCCTACCGCTGCCACTATTCTCTTTCAATATCTCATCAAACACAAATGGCTCACTT
GGCCTAGGTGGATTCATAAATATTCTACTGTACAAGTTTTATATCTTTTAAATCAACTCTCTCTCAACAAATTAAAAGTGTACAACCAACC
Protein sequenceShow/hide protein sequence
MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ