CuGenDBv2

Gene ID	CSPI07G01490
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Chr7:1352160..1352648
RNA-Seq Expression	CSPI07G01490
Synteny	CSPI07G01490
Gene Ontology terms	GO:0006468 - protein phosphorylation (biological process) GO:0015074 - DNA integration (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004672 - protein kinase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0030247 - polysaccharide binding (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.4e-78

90.74

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Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        SSLVLSGF DADWAGDP+DRRSTTGYCFYLGDALISW SKKQ VVS+SSTESEY ALADATSEL+WLRWLLTDMGAPQTS T LHCDN SAIQIAHNDVF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
        HERTKHIENDCHFVRHHLQSNTLHLQ IST DQPADIFTKALHSPRFT L+HKLKVVSTLP+
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

KAA0044752.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.4e-78

90.74

Show/hide

Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        SSLVLSGF DADWAGDP+DRRSTTGYCFYLGDALISW SKKQ VVS+SSTESEY ALADATSEL+WLRWLLTDMGAPQTS T LHCDN SAIQIAHNDVF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
        HERTKHIENDCHFVRHHLQSNTLHLQ IST DQPADIFTKALHSPRFT L+HKLKVVSTLP+
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]

8.3e-79

90.74

Show/hide

Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        SSLVL GF DADWAGDP+DRRSTTGYCFYLGDALISW SKKQ VV +SSTESEYCALADATSELLWLRWLLTDMGAPQTS T LHCDNRSAIQIAH+DVF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
        HERTKHIENDCHFVRHHLQSNTLHLQ IST DQPADIFTKALHSPRFT L+HKLKVVSTLP+
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.4e-78

90.74

Show/hide

Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        SSLVLSGF DADWAGDP+DRRSTTGYCFYLGDALISW SKKQ VVS+SSTESEY ALADATSEL+WLRWLLTDMGAPQTS T LHCDN SAIQIAHNDVF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
        HERTKHIENDCHFVRHHLQSNTLHLQ IST DQPADIFTKALHSPRFT L+HKLKVVSTLP+
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

XP_031739983.1 uncharacterized protein LOC116403334 [Cucumis sativus]

6.1e-82

94.44

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Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        SSLVL GF DADWAGDP+DRRSTTGYCFYLGDALISW SKKQYVVS+SSTE EY ALADATSELLWLRW+LTDMGAP TSSTTLHCDNRSAIQIAHNDVF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
        HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.8e-79

90.74

Show/hide

Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        SSLVLSGF DADWAGDP+DRRSTTGYCFYLGDALISW SKKQ VVS+SSTESEY ALADATSEL+WLRWLLTDMGAPQTS T LHCDN SAIQIAHNDVF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
        HERTKHIENDCHFVRHHLQSNTLHLQ IST DQPADIFTKALHSPRFT L+HKLKVVSTLP+
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

A0A5A7TXR0 Putative mitochondrial protein

4.0e-79

90.74

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Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        SSLVL GF DADWAGDP+DRRSTTGYCFYLGDALISW SKKQ VV +SSTESEYCALADATSELLWLRWLLTDMGAPQTS T LHCDNRSAIQIAH+DVF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
        HERTKHIENDCHFVRHHLQSNTLHLQ IST DQPADIFTKALHSPRFT L+HKLKVVSTLP+
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

A0A5A7VDV6 Putative mitochondrial protein

6.8e-79

90.74

Show/hide

Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        SSLVLSGF DADWAGDP+DRRSTTGYCFYLGDALISW SKKQ VVS+SSTESEY ALADATSEL+WLRWLLTDMGAPQTS T LHCDN SAIQIAHNDVF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
        HERTKHIENDCHFVRHHLQSNTLHLQ IST DQPADIFTKALHSPRFT L+HKLKVVSTLP+
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.8e-79

90.74

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Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        SSLVLSGF DADWAGDP+DRRSTTGYCFYLGDALISW SKKQ VVS+SSTESEY ALADATSEL+WLRWLLTDMGAPQTS T LHCDN SAIQIAHNDVF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
        HERTKHIENDCHFVRHHLQSNTLHLQ IST DQPADIFTKALHSPRFT L+HKLKVVSTLP+
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

A0A5D3DWU7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.8e-79

90.74

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Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        SSLVLSGF DADWAGDP+DRRSTTGYCFYLGDALISW SKKQ VVS+SSTESEY ALADATSEL+WLRWLLTDMGAPQTS T LHCDN SAIQIAHNDVF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
        HERTKHIENDCHFVRHHLQSNTLHLQ IST DQPADIFTKALHSPRFT L+HKLKVVSTLP+
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.4e-28

46.31

Show/hide

Query:  GFFDADWAGDPSDRRSTTGYCFYLGD-ALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVFHERTK
        G+ D+DWAG   DR+STTGY F + D  LI W++K+Q  V+ SSTE+EY AL +A  E LWL++LLT +     +   ++ DN+  I IA+N   H+R K
Subjt:  GFFDADWAGDPSDRRSTTGYCFYLGD-ALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVFHERTK

Query:  HIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKL
        HI+   HF R  +Q+N + L+ I T +Q ADIFTK L + RF  L  KL
Subjt:  HIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKL

P0CV72 Secreted RxLR effector protein 161

3.3e-14

58.73

Show/hide

Query:  LSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWL
        L G+ DADWAGD   RRST+GY F L    +SW SKKQ  V+ SSTE EY AL++AT E +WL
Subjt:  LSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.5e-26

39.6

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Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        S  +L G+ DAD AGD  +R+S+TGY F      ISW SK Q  V+ S+TE+EY A  +   E++WL+  L ++G  Q     ++CD++SAI ++ N ++
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTL
        H RTKHI+   H++R  +   +L +  IST + PAD+ TK +   +F L
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.9e-30

44.44

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Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        ++L L  + DADWAGD  D  ST GY  YLG   ISW SKKQ  V +SSTE+EY ++A+ +SE+ W+  LLT++G   T    ++CDN  A  +  N VF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
        H R KHI  D HF+R+ +QS  L +  +ST DQ AD  TK L    F     K+ V    P+
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.1e-30

44.44

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Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        ++L L  + DADWAGD  D  ST GY  YLG   ISW SKKQ  V +SSTE+EY ++A+ +SEL W+  LLT++G   +    ++CDN  A  +  N VF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT
        H R KHI  D HF+R+ +QS  L +  +ST DQ AD  TK L    F     K+ V+   P+
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.1e-28

47.89

Show/hide

Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF
        + + L  F DA +      RRST GYC +LG +LISW SKKQ VVS+SS E+EY AL+ AT E++WL     ++  P +  T L CDN +AI IA N VF
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVF

Query:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKAL
        HERTKHIE+DCH VR           S    D+  D FT+ L
Subjt:  HERTKHIENDCHFVRHHLQSNTLHLQSISTIDQPADIFTKAL

ATMG00810.1 DNA/RNA polymerases superfamily protein

2.6e-14

56.06

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Query:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLW
        S L +  F D+DWAG  S RRSTTG+C +LG  +ISW +K+Q  VS+SSTE+EY ALA   +EL W
Subjt:  SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLW

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TCTTCTCTGGTTCTCTCTGGATTCTTTGATGCTGATTGGGCAGGAGATCCTTCTGATAGAAGATCCACCACTGGCTATTGTTTTTATTTAGGTGATGCTCTTATCTCCTG
GCACAGCAAGAAACAATATGTTGTTTCCCAGTCTAGCACTGAGTCTGAATATTGTGCTCTAGCTGATGCCACTTCAGAATTATTATGGCTTCGTTGGCTACTTACTGATA
TGGGAGCCCCACAAACATCATCTACTACTCTCCATTGTGATAACCGCAGTGCCATTCAGATTGCACACAATGATGTATTTCATGAACGAACAAAGCACATAGAGAACGAT
TGTCATTTTGTCCGTCATCATCTTCAAAGCAACACTCTCCATCTTCAATCTATCTCTACCATTGATCAACCTGCAGATATCTTCACCAAAGCTCTCCATTCTCCTCGTTT
CACTCTGTTACTTCACAAACTCAAGGTGGTTTCTACTCTACCAACTTGA

mRNA sequence

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Protein sequence

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SSLVLSGFFDADWAGDPSDRRSTTGYCFYLGDALISWHSKKQYVVSQSSTESEYCALADATSELLWLRWLLTDMGAPQTSSTTLHCDNRSAIQIAHNDVFHERTKHIEND
CHFVRHHLQSNTLHLQSISTIDQPADIFTKALHSPRFTLLLHKLKVVSTLPT

CSPI07G01490 (gene) of Cucumber (PI 183967) v1 genome