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CSPI07G02100 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G02100
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L38
Genome locationChr7:1813677..1816677
RNA-Seq ExpressionCSPI07G02100
SyntenyCSPI07G02100
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0016020 - membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646019.1 hypothetical protein Csa_015924 [Cucumis sativus]1.1e-4762.84Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTRFECTRSVEFDRDGVVRGKNHKSCVAEAYIVGDFELAMS
        MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTR            G++  K  K+ +    ++    L   
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTRFECTRSVEFDRDGVVRGKNHKSCVAEAYIVGDFELAMS

Query:  REQFKNQY---VKGTISLKEVSDQKAHKAILKPLNLHSIAGGFALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKK
            K      +    S  +     +H   L    + SIAGG ALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKK
Subjt:  REQFKNQY---VKGTISLKEVSDQKAHKAILKPLNLHSIAGGFALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKK

KAE8646721.1 hypothetical protein Csa_005163 [Cucumis sativus]4.4e-2078.38Show/hide
Query:  DSFRAYMEPI----LHNQQLSGSLSSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        D  +  + P+    LHNQQL GSL SATKMPKQIHEIK FLL ARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
Subjt:  DSFRAYMEPI----LHNQQLSGSLSSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

KAG6742447.1 hypothetical protein POTOM_053318 [Populus tomentosa]1.1e-1563.1Show/hide
Query:  QQLSGSLSSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLE--GRQVEAIPSTRFECTRSVE
        Q L G  S    +PKQIHEIK FLL ARRKDARSVKIKRS+DVVKFKVRCSKYLYTL     E   +  +++P  +FEC+RSV+
Subjt:  QQLSGSLSSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLE--GRQVEAIPSTRFECTRSVE

PQP96040.1 putative 60S ribosomal protein L38 [Prunus yedoensis var. nudiflora]5.3e-1870.13Show/hide
Query:  SATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS-FRLLEGRQVEAIPSTRFECTRSVEFD
        SA +MPKQIHEIK FLL ARRKDARSVKIKRSKD VKFKVRCSKY YTL  F   +  + EA+PS+RFEC R V ++
Subjt:  SATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS-FRLLEGRQVEAIPSTRFECTRSVEFD

XP_038906668.1 60S ribosomal protein L38-like [Benincasa hispida]1.1e-2083.1Show/hide
Query:  NDSFRAYMEPILHNQQLSGSLSSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        N++F+      LHNQQL GSLSSATKMPKQIHEIK FLL ARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
Subjt:  NDSFRAYMEPILHNQQLSGSLSSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

TrEMBL top hitse value%identityAlignment
A0A0A0K2Z5 60S ribosomal protein L382.9e-9498.89Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTRFECTRSVEFDRDGVVRGKNHKSCVAEAYIVGDFELAMS
        MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTRFECTRSVEFDRDGVVRGKNHKSCVAEAYIVGDFELAMS
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTRFECTRSVEFDRDGVVRGKNHKSCVAEAYIVGDFELAMS

Query:  REQFKNQYVKGTISLKEVSDQKAHKAILKPLNLHSIAGGFALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKK
        REQFKNQYVKGTISLKEVSDQKAHKAILK LNLHSIAGG ALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKK
Subjt:  REQFKNQYVKGTISLKEVSDQKAHKAILKPLNLHSIAGGFALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKK

A0A2K1X213 Uncharacterized protein4.5e-1569.33Show/hide
Query:  SSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTRFECTRSVE
        S   KMPKQIHEIK FLL ARRKDARSVKIKRS+DVVKFKVRCSKYLYTL    +  R+  A+    FEC+RSV+
Subjt:  SSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTRFECTRSVE

A0A314XWM2 Putative 60S ribosomal protein L382.6e-1870.13Show/hide
Query:  SATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS-FRLLEGRQVEAIPSTRFECTRSVEFD
        SA +MPKQIHEIK FLL ARRKDARSVKIKRSKD VKFKVRCSKY YTL  F   +  + EA+PS+RFEC R V ++
Subjt:  SATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS-FRLLEGRQVEAIPSTRFECTRSVEFD

A0A3P6C581 Uncharacterized protein1.7e-1457.65Show/hide
Query:  PKSHNDSFRAYMEPILH----------NQQLSGSLSSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        P SH+  F +Y+E +L+            + +   +S  +MPKQIHEIK FLL ARRKDARSVKIKRSKD+VKFKVRCS+YLYTL
Subjt:  PKSHNDSFRAYMEPILH----------NQQLSGSLSSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

M4DDG7 Uncharacterized protein1.7e-1457.65Show/hide
Query:  PKSHNDSFRAYMEPILH----------NQQLSGSLSSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        P SH+  F +Y+E +L+            + +   +S  +MPKQIHEIK FLL ARRKDARSVKIKRSKD+VKFKVRCS+YLYTL
Subjt:  PKSHNDSFRAYMEPILH----------NQQLSGSLSSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L383.4e-1591.11Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MPKQIHEIK FLL ARRKDARSVKIKRSKD+VKFKVRCS+YLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

P46291 60S ribosomal protein L382.8e-1486.67Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MPKQIHEIK FLL ARRKDAR+VKIK++KD+VKFKVRCSKYLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

P63173 60S ribosomal protein L381.0e-1177.78Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MP++I EIK FLL ARRKDA+SVKIK++KD VKFKVRCS+YLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

Q32PB9 60S ribosomal protein L381.0e-1177.78Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MP++I EIK FLL ARRKDA+SVKIK++KD VKFKVRCS+YLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

Q95V84 60S ribosomal protein L381.8e-1384.44Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MPKQIHEIK FLL ARRKDA+SVKIK++KD VKFKVRCS+YLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

Arabidopsis top hitse value%identityAlignment
AT1G30820.1 CTP synthase family protein5.0e-0657.14Show/hide
Query:  VSDQKAHKAILKPLNLHSIAGGFALEEWTARAKMYDSLHEPV
        + DQKAH AI K LNL SI    +L EWT+RA++ D+LH PV
Subjt:  VSDQKAHKAILKPLNLHSIAGGFALEEWTARAKMYDSLHEPV

AT2G43460.1 Ribosomal L38e protein family2.4e-1691.11Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MPKQIHEIK FLL ARRKDARSVKIKRSKD+VKFKVRCS+YLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

AT3G59540.1 Ribosomal L38e protein family2.4e-1691.11Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MPKQIHEIK FLL ARRKDARSVKIKRSKD+VKFKVRCS+YLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

AT4G20320.1 CTP synthase family protein2.9e-0654.76Show/hide
Query:  VSDQKAHKAILKPLNLHSIAGGFALEEWTARAKMYDSLHEPV
        + +QKAH+AI + LNL  +A   ALEEW+  AKM D LH PV
Subjt:  VSDQKAHKAILKPLNLHSIAGGFALEEWTARAKMYDSLHEPV

AT4G20320.2 CTP synthase family protein2.9e-0654.76Show/hide
Query:  VSDQKAHKAILKPLNLHSIAGGFALEEWTARAKMYDSLHEPV
        + +QKAH+AI + LNL  +A   ALEEW+  AKM D LH PV
Subjt:  VSDQKAHKAILKPLNLHSIAGGFALEEWTARAKMYDSLHEPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTGAATGTGTTTGGCGTTCGGTATGGCACCCGTCCACCACCATCAAGCATCCTCGAGCTTCATTTGGTTGCGCTACCAAAGTCGCATAATGATTCATTTAGGGC
ATACATGGAACCAATCCTCCACAATCAGCAACTAAGCGGCAGTCTCAGTTCTGCCACCAAAATGCCAAAACAAATTCATGAGATCAAAGGTTTCCTTCTCGCTGCTAGAA
GGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTTTGTCTTTTCGACTCTTAGAAGGCAGA
CAAGTTGAAGCAATCCCTTCCACCAGGTTTGAGTGTACAAGATCTGTTGAATTTGATAGAGATGGGGTTGTTAGAGGAAAAAATCACAAAAGCTGTGTTGCAGAGGCCTA
CATTGTTGGAGACTTCGAGCTTGCTATGTCAAGAGAACAATTTAAAAATCAGTATGTTAAGGGAACAATTTCCTTAAAAGAAGTTTCTGATCAAAAGGCGCATAAAGCAA
TCTTGAAACCGCTGAATCTTCACAGTATAGCTGGTGGTTTCGCTTTAGAGGAGTGGACTGCTAGGGCCAAAATGTATGATTCACTACATGAACCGGTAGAGAATAGGAGA
GGTTTTGGTGATCTGGAAGACGATGAGGACGACTTCTTTATCTCCAAAAAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTGAATGTGTTTGGCGTTCGGTATGGCACCCGTCCACCACCATCAAGCATCCTCGAGCTTCATTTGGTTGCGCTACCAAAGTCGCATAATGATTCATTTAGGGC
ATACATGGAACCAATCCTCCACAATCAGCAACTAAGCGGCAGTCTCAGTTCTGCCACCAAAATGCCAAAACAAATTCATGAGATCAAAGGTTTCCTTCTCGCTGCTAGAA
GGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTTTGTCTTTTCGACTCTTAGAAGGCAGA
CAAGTTGAAGCAATCCCTTCCACCAGGTTTGAGTGTACAAGATCTGTTGAATTTGATAGAGATGGGGTTGTTAGAGGAAAAAATCACAAAAGCTGTGTTGCAGAGGCCTA
CATTGTTGGAGACTTCGAGCTTGCTATGTCAAGAGAACAATTTAAAAATCAGTATGTTAAGGGAACAATTTCCTTAAAAGAAGTTTCTGATCAAAAGGCGCATAAAGCAA
TCTTGAAACCGCTGAATCTTCACAGTATAGCTGGTGGTTTCGCTTTAGAGGAGTGGACTGCTAGGGCCAAAATGTATGATTCACTACATGAACCGGTAGAGAATAGGAGA
GGTTTTGGTGATCTGGAAGACGATGAGGACGACTTCTTTATCTCCAAAAAG
Protein sequenceShow/hide protein sequence
MSLNVFGVRYGTRPPPSSILELHLVALPKSHNDSFRAYMEPILHNQQLSGSLSSATKMPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGR
QVEAIPSTRFECTRSVEFDRDGVVRGKNHKSCVAEAYIVGDFELAMSREQFKNQYVKGTISLKEVSDQKAHKAILKPLNLHSIAGGFALEEWTARAKMYDSLHEPVENRR
GFGDLEDDEDDFFISKK