; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI07G03170 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G03170
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationChr7:2544697..2546736
RNA-Seq ExpressionCSPI07G03170
SyntenyCSPI07G03170
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144523.1 uncharacterized protein At4g28440 [Cucumis sativus]2.3e-7299.31Show/hide
Query:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE

XP_008455497.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis melo]3.9e-7299.31Show/hide
Query:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE

XP_022136009.1 uncharacterized protein At4g28440-like [Momordica charantia]7.0e-6994.48Show/hide
Query:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT A NAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVK+VNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE

XP_022988994.1 uncharacterized protein At4g28440-like [Cucurbita maxima]2.0e-6893.1Show/hide
Query:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE

XP_038887250.1 uncharacterized protein At4g28440-like [Benincasa hispida]1.1e-7198.62Show/hide
Query:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE

TrEMBL top hitse value%identityAlignment
A0A0A0K1C6 Uncharacterized protein1.1e-7299.31Show/hide
Query:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE

A0A1S3C119 uncharacterized protein At4g284401.9e-7299.31Show/hide
Query:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE

A0A5A7UWS4 Uncharacterized protein1.9e-7299.31Show/hide
Query:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE

A0A6J1C327 uncharacterized protein At4g28440-like3.4e-6994.48Show/hide
Query:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT A NAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVK+VNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE

A0A6J1JN47 uncharacterized protein At4g28440-like9.8e-6993.1Show/hide
Query:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284403.9e-4664.79Show/hide
Query:  ATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKID
        A     +  KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +RI ECL+GDETG I+FTARNDQVD+MKPG TV LRN++ID
Subjt:  ATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKID

Query:  MFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNV
        MFKG+MRL VDKWGR+E    A+F  KEDNNLSLVEYEL+NV
Subjt:  MFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNV

Q97W73 Single-stranded DNA binding protein Ssb8.1e-0429.36Show/hide
Query:  KVEELKPGTSGHTLTVKVVSSKNVK-VVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR
        KV  LKP      +TV+V+ +   + +  K G  T           ISE +VGDETG +  T        +K G  V + NA    FKG ++L      +
Subjt:  KVEELKPGTSGHTLTVKVVSSKNVK-VVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR

Query:  VEVAEPANF
        +  A    F
Subjt:  VEVAEPANF

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein2.4e-4367.65Show/hide
Query:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEVA-EPANFEAKEDNNLSLVEYELVNVE
        AVD+WGRVEVA EP +   K+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEVA-EPANFEAKEDNNLSLVEYELVNVE

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein2.4e-4367.65Show/hide
Query:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEVA-EPANFEAKEDNNLSLVEYELVNVE
        AVD+WGRVEVA EP +   K+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEVA-EPANFEAKEDNNLSLVEYELVNVE

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein4.4e-4568.66Show/hide
Query:  RKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAV
        +KP F KV++L+PGTSGH + VK+VS+   K+V + GR+    AR     RISEC+VGDETG IVFTARNDQVD+MK G+TVTLRNAKIDM+KGSMRLAV
Subjt:  RKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAV

Query:  DKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
        DKWGRVEV EPA+F+ KED N+SL+EYELVNV E
Subjt:  DKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein8.0e-4769.01Show/hide
Query:  PAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMF
        P      K+KPVFVKV++LKPGTSGHTLTVKVV   +V    K G ++    RP    RISECLVGDET  I+FTARNDQV++MKPG TV LRNAKIDMF
Subjt:  PAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMF

Query:  KGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE
        KGSMRLAVDKWGR+E  EPA+   KEDNNLSLVEYELVNV E
Subjt:  KGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein2.7e-4764.79Show/hide
Query:  ATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKID
        A     +  KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +RI ECL+GDETG I+FTARNDQVD+MKPG TV LRN++ID
Subjt:  ATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKID

Query:  MFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNV
        MFKG+MRL VDKWGR+E    A+F  KEDNNLSLVEYEL+NV
Subjt:  MFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGCCAGCAGCCAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTAAAGCCTGGTACCAGTGGCCACACTCTCACCGTCAAGGTTGTGAG
TTCCAAAAATGTTAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACTGCTCGCCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTT
CCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTAAGGAATGCAAAGATTGACATGTTCAAAGGTTCTATGAGGTTAGCA
GTAGATAAATGGGGACGAGTTGAAGTAGCTGAACCAGCCAACTTTGAGGCTAAAGAAGACAACAATCTCTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGA
mRNA sequenceShow/hide mRNA sequence
CTGGAAAATGAGCCCATATTCTAAAACCCAATCTGGAAATCCCAAATGTGAGTAGAACGCGAAATTAATTTCTTAGGGTTAGGGTTTTGACCCTCAGGTTCGGTTTCATT
CTCCATTTTCGCGTTCTATTTTCATCGGCAACGGAAATTCGTTCATATTCTTGGATTTCCATGGCGACGCCAGCAGCCAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGT
AAAAGTAGAAGAGCTAAAGCCTGGTACCAGTGGCCACACTCTCACCGTCAAGGTTGTGAGTTCCAAAAATGTTAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTA
CTGCTCGCCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGA
AACACTGTGACCCTAAGGAATGCAAAGATTGACATGTTCAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAGTTGAAGTAGCTGAACCAGCCAACTTTGAGGC
TAAAGAAGACAACAATCTCTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGACTTGAAATTATGCAGTGTTAATTATCATGGATTTACTTTCTTTATTGTGTGG
TGGACTGCTATTTAACTGGTATACAGTTTCTATATGGCAACACAAAAATCTTGCTGAGAGTAATATAAGTTGATTATTGATGTGCCCAACTATGCTTAATTTGGATCTGA
TGTGATAAAGATCTTCAAAGGCAAAGTGCAAATGTTACTATCTGGTCTACTTATTATTTTGAAAAGTAAATAGAATGCTTTACCAATGTAGCTTTGTTTTGGTCCCTTAT
TTCTATTAACTATTGGGGTATTCTGCTAACTTGCATTTGAGGAAAGGTATATTTGATACATACATTGTAGCCTTTGCATTCATGGAAATCGAC
Protein sequenceShow/hide protein sequence
MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA
VDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE