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CSPI07G04050 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G04050
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGeranylgeranyl transferase type-2 subunit beta
Genome locationChr7:3145931..3146479
RNA-Seq ExpressionCSPI07G04050
SyntenyCSPI07G04050
Gene Ontology termsGO:0018344 - protein geranylgeranylation (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0005968 - Rab-protein geranylgeranyltransferase complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0004601 - peroxidase activity (molecular function)
GO:0004663 - Rab geranylgeranyltransferase activity (molecular function)
GO:0005509 - calcium ion binding (molecular function)
GO:0050664 - oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor (molecular function)
InterPro domainsIPR001330 - PFTB repeat
IPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR045089 - Prenyltransferase subunit beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645752.1 hypothetical protein Csa_020534 [Cucumis sativus]4.9e-5496.49Show/hide
Query:  MHTLPLTNFIMLLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDS--QDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNR
        MHTLPLT+FIMLLPFCHSRWVLSSLIMIDR HWINKERLIKFILDS  QDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNR
Subjt:  MHTLPLTNFIMLLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDS--QDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNR

Query:  IFLSKKIVSSKAID
        IFLSKKIVSSKAID
Subjt:  IFLSKKIVSSKAID

XP_022153059.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Momordica charantia]1.2e-3688.76Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKK
        C+S WVLSSLIMIDRVHWINKE+LI+FILD QDTENGGIS R DDAVDVYHT FGIAGLSLLEYPG KAIDPAYALPVDVVNRIFL KK
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKK

XP_022153066.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Momordica charantia]1.2e-3688.76Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKK
        C+S WVLSSLIMIDRVHWINKE+LI+FILD QDTENGGIS R DDAVDVYHT FGIAGLSLLEYPG KAIDPAYALPVDVVNRIFL KK
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKK

XP_038887307.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida]2.7e-3688.76Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKK
        C+S WVLSSLIMI RVHWINKE+LIKFILD QDTENGGIS R DDAVDVYHT FGIAGLSLLEYPG KAIDPAYALPVDVVNRIFL KK
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKK

XP_038887312.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida]2.7e-3688.76Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKK
        C+S WVLSSLIMI RVHWINKE+LIKFILD QDTENGGIS R DDAVDVYHT FGIAGLSLLEYPG KAIDPAYALPVDVVNRIFL KK
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKK

TrEMBL top hitse value%identityAlignment
A0A0A0K5L9 Uncharacterized protein7.4e-5698.21Show/hide
Query:  MHTLPLTNFIMLLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIF
        MHTLPLT+FIMLLPFCHSRWVLSSLIMIDR HWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIF
Subjt:  MHTLPLTNFIMLLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIF

Query:  LSKKIVSSKAID
        LSKKIVSSKAID
Subjt:  LSKKIVSSKAID

A0A6J1DHW7 Geranylgeranyl transferase type-2 subunit beta5.9e-3788.76Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKK
        C+S WVLSSLIMIDRVHWINKE+LI+FILD QDTENGGIS R DDAVDVYHT FGIAGLSLLEYPG KAIDPAYALPVDVVNRIFL KK
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKK

A0A6J1DJK5 Geranylgeranyl transferase type-2 subunit beta5.9e-3788.76Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKK
        C+S WVLSSLIMIDRVHWINKE+LI+FILD QDTENGGIS R DDAVDVYHT FGIAGLSLLEYPG KAIDPAYALPVDVVNRIFL KK
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKK

A0A7J6E4X9 Geranylgeranyl transferase type-2 subunit beta5.0e-3686.36Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK
        C+S WVLSSLIMIDRVHWINKE+L+KFILD QD ENGGIS R DDAVDVYHT FG+AGLSLLEYPG KAIDPAYALPVDVVNRIFL K
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK

A0A7J6FEP7 Geranylgeranyl transferase type-2 subunit beta5.0e-3686.36Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK
        C+S WVLSSLIMIDRVHWINKE+L+KFILD QD ENGGIS R DDAVDVYHT FG+AGLSLLEYPG KAIDPAYALPVDVVNRIFL K
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK

SwissProt top hitse value%identityAlignment
O93830 Geranylgeranyl transferase type-2 subunit beta6.9e-1952.94Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYP--GPKAIDPAYALPVDVVNR
        C+S WVLSSL ++ R +W++ + L  FIL  QD ENGG S R  +  DVYHTCF IAGLSL++Y   G K IDP Y +PV+V ++
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYP--GPKAIDPAYALPVDVVNR

P20133 Geranylgeranyl transferase type-2 subunit beta4.1e-1953.01Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNR
        C+S WVLSSL +I R+ WIN E+L +FIL  QD + GGIS R ++ VDV+HT FG+AGLSL+ Y     IDP Y +P  V ++
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNR

P46960 Geranylgeranyl transferase type-2 subunit beta8.2e-2045.35Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFL
        C+  W LS L +I ++ WI++ +LI F+L +QD ++GG + R++DA DVYHTCF +AGLSLL++P  + +DP + LP++V  ++ L
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFL

Q84J75 Geranylgeranyl transferase type-2 subunit beta 12.6e-3473.91Show/hide
Query:  LLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK
        L   C+S WVLSSLIMIDRVHWI+K +L+KFILD QD +NGGIS R +DAVD++HT FG+AGLSLLEYPG K IDPAYALPVDVVNRI  +K
Subjt:  LLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK

Q9LHL5 Geranylgeranyl transferase type-2 subunit beta 23.2e-3272.73Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK
        C+S WVLSSLIMIDRVHWI K +L+KFILDSQD +NGGIS R    VD++HT FG+AGLSLLEYPG K IDPAYALPV V+NRI  +K
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK

Arabidopsis top hitse value%identityAlignment
AT3G12070.1 RAB geranylgeranyl transferase beta subunit 22.3e-3372.73Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK
        C+S WVLSSLIMIDRVHWI K +L+KFILDSQD +NGGIS R    VD++HT FG+AGLSLLEYPG K IDPAYALPV V+NRI  +K
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK

AT3G12070.2 RAB geranylgeranyl transferase beta subunit 22.3e-3372.73Show/hide
Query:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK
        C+S WVLSSLIMIDRVHWI K +L+KFILDSQD +NGGIS R    VD++HT FG+AGLSLLEYPG K IDPAYALPV V+NRI  +K
Subjt:  CHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK

AT5G12210.1 RAB geranylgeranyl transferase beta subunit 11.9e-3573.91Show/hide
Query:  LLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK
        L   C+S WVLSSLIMIDRVHWI+K +L+KFILD QD +NGGIS R +DAVD++HT FG+AGLSLLEYPG K IDPAYALPVDVVNRI  +K
Subjt:  LLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK

AT5G12210.2 RAB geranylgeranyl transferase beta subunit 11.9e-3573.91Show/hide
Query:  LLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK
        L   C+S WVLSSLIMIDRVHWI+K +L+KFILD QD +NGGIS R +DAVD++HT FG+AGLSLLEYPG K IDPAYALPVDVVNRI  +K
Subjt:  LLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATACTCTCCCACTCACCAACTTCATTATGTTGCTTCCGTTTTGCCACTCACGGTGGGTTCTTTCGAGCTTGATCATGATTGACAGAGTTCACTGGATTAATAAGGA
AAGACTCATTAAATTCATCTTAGATTCTCAGGACACAGAAAATGGTGGTATTTCAGGCAGACGGGATGACGCTGTTGATGTCTATCACACATGCTTTGGAATAGCTGGCC
TTTCACTTCTTGAATATCCAGGACCGAAAGCCATTGATCCAGCTTATGCTTTACCAGTTGACGTTGTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCATCCAAAGCT
ATCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATACTCTCCCACTCACCAACTTCATTATGTTGCTTCCGTTTTGCCACTCACGGTGGGTTCTTTCGAGCTTGATCATGATTGACAGAGTTCACTGGATTAATAAGGA
AAGACTCATTAAATTCATCTTAGATTCTCAGGACACAGAAAATGGTGGTATTTCAGGCAGACGGGATGACGCTGTTGATGTCTATCACACATGCTTTGGAATAGCTGGCC
TTTCACTTCTTGAATATCCAGGACCGAAAGCCATTGATCCAGCTTATGCTTTACCAGTTGACGTTGTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCATCCAAAGCT
ATCGATTGA
Protein sequenceShow/hide protein sequence
MHTLPLTNFIMLLPFCHSRWVLSSLIMIDRVHWINKERLIKFILDSQDTENGGISGRRDDAVDVYHTCFGIAGLSLLEYPGPKAIDPAYALPVDVVNRIFLSKKIVSSKA
ID