CuGenDBv2

Gene ID	CSPI07G04480
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic
Genome location	Chr7:3361816..3362730
RNA-Seq Expression	CSPI07G04480
Synteny	CSPI07G04480
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0071484 - cellular response to light intensity (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572353.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

5.1e-71

86.71

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Query:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTV----RRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAA
        MASPTLITP TSKSQ   IPLKPKSSI+AA TT T     RRREFLSLTASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAA
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTV----RRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAA

Query:  VADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        VA+LRESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  VADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_004136817.1 photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus]

2.3e-84

99.41

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Query:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
        MASPTLITPCTSKSQSPFIPLKPKS+ISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL

Query:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_008455335.1 PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo]

1.3e-82

97.63

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Query:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
        MASPTLITPCTSKSQSPFIPLKPKS+ISAAVTTPTVRRR+FLSL+ASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL

Query:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022952622.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

3.0e-71

87.79

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Query:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV
        MASPTLITP TSKSQ   IPLKPKSSISAA TT T    RRREFLSLTASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAV
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV

Query:  ADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        A+LRESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  ADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_038887363.1 photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida]

5.1e-79

93.49

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Query:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
        MASPTLITPCTSKSQ+PFIPLKPKS+ISAA T  TVRRR+FLSLTASVLAPS+VLFPQSPALA+SDDEYVKDT+EVIGKVR TITMDRNDPNVAAAVA+L
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL

Query:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1S2 Uncharacterized protein

1.1e-84

99.41

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Query:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
        MASPTLITPCTSKSQSPFIPLKPKS+ISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL

Query:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A1S3C1X2 photosystem II repair protein PSB27-H1, chloroplastic

6.2e-83

97.63

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Query:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
        MASPTLITPCTSKSQSPFIPLKPKS+ISAAVTTPTVRRR+FLSL+ASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL

Query:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A5A7SR30 Photosystem II repair protein PSB27-H1

6.2e-83

97.63

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Query:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
        MASPTLITPCTSKSQSPFIPLKPKS+ISAAVTTPTVRRR+FLSL+ASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADL

Query:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like

1.4e-71

87.79

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Query:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV
        MASPTLITP TSKSQ   IPLKPKSSISAA TT T    RRREFLSLTASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAV
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV

Query:  ADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        A+LRESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  ADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like

1.4e-71

87.79

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Query:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV
        MASPTLITP TSKSQ   IPLKPKSSISAA TT T    RRREFLSLTASVLAPS+VLFP +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAV
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV

Query:  ADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        A+LRESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  ADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

5.3e-47

60.34

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Query:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSL--TASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAA
        MAS +        +  P  P    SS+S  +  P    + RR+FLSL  T+++L  S      +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA 
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSL--TASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAA

Query:  AVADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVA+LRE+SN WVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  AVADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

1.7e-05

27.55

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Query:  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL
        Y+K   EV+  +R ++  +  D       AD  +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Subjt:  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

3.8e-48

60.34

Show/hide

Query:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSL--TASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAA
        MAS +        +  P  P    SS+S  +  P    + RR+FLSL  T+++L  S      +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA 
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSL--TASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAA

Query:  AVADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVA+LRE+SN WVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  AVADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

AT1G05385.1 photosystem II 11 kDa protein-related

1.2e-06

27.55

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Query:  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL
        Y+K   EV+  +R ++  +  D       AD  +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Subjt:  YVKDTNEVIGKVRTTITMDRNDPNVAAAVAD-LRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCTTTCATACCTCTCAAACCCAAATCCTCCATTTCCGCTGCCGTAACAACCCCCACCGTCCG
CCGCCGCGAGTTCCTTTCTTTGACCGCCTCTGTTCTAGCGCCGTCGTTCGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCA
ATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACAGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCGAATTTTTGGGTGGCTAAG
TATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAACGCTGTGTCGGGGCATTATATTAGCTTCGGACCGACTGCGCCGATACC
GGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

mRNA sequence

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TGGTCCATCCCTCATCCATAAGTCCAACAAATAAGATAAGACGATAAGCACACGTGGCAATCACCCAATTCCTCCAATTTTTTTCTAACTAAACAATCCATCTTCACATT
TCATTTCCCCTTCTCCTCTTCCAAAACTCCAATTTCCCCAAAATCATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCTTTCATACCTCTCAA
ACCCAAATCCTCCATTTCCGCTGCCGTAACAACCCCCACCGTCCGCCGCCGCGAGTTCCTTTCTTTGACCGCCTCTGTTCTAGCGCCGTCGTTCGTTCTGTTCCCTCAAT
CTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACAGAAATGACCCGAATGTGGCAGCA
GCGGTGGCGGATCTTCGAGAAAGTTCGAATTTTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAACGC
TGTGTCGGGGCATTATATTAGCTTCGGACCGACTGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGA
GATGAAAATTTATGTGAGGCTTTTTCATTCTTTTTCTCTTTGTATTTTTATTTATTTTTTTCTTCCCAAGTATTGGAGTTTAACGTTTATGGGTTATGTAAGTATAGAAT
TTGGGGATTCACAATTTGTGAATTTACAAGAGGAAAATATTCTAAATTTATCTAAGATTAATAGAGACCGGACTTTATGTCTTGATTAGTTGGATGGATTTAGTAAATTA
TGCATGAGATAATAATGTTACATGTTTTAGCTCAT

Protein sequence

Show/hide protein sequence

MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAK
YRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

CSPI07G04480 (gene) of Cucumber (PI 183967) v1 genome