; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI07G06930 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G06930
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description40S ribosomal protein S29
Genome locationChr7:5076227..5078029
RNA-Seq ExpressionCSPI07G06930
SyntenyCSPI07G06930
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001209 - Ribosomal protein S14
IPR023676 - Ribosomal protein S14, type Z, archaeal
IPR039744 - 40S ribosomal protein S29/30S ribosomal protein S14 type Z
IPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAU00845.1 hypothetical protein VIGAN_10248000 [Vigna angularis var. angularis]1.1e-2691.67Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYI
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK  + Y+
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYI

KAA0064432.1 40S ribosomal protein S29 [Cucumis melo var. makuwa]6.5e-2790.16Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYID
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+ +   D
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYID

KAB1204029.1 40S ribosomal protein S29 [Morella rubra]6.5e-2768.29Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYIDQVNHRPFPLADMSNANSNRRF
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+       + +  + +A+ +   + + F
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYIDQVNHRPFPLADMSNANSNRRF

KGN43857.1 hypothetical protein Csa_017372 [Cucumis sativus]2.2e-5999.08Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYIDQVNHRPFPLADMSNANSNRRFKSRQLDKFLLLHYHLGTV
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYIDQVNHRP+PLADMSNANSNRRFKSRQLDKFLLLHYHLGTV
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYIDQVNHRPFPLADMSNANSNRRFKSRQLDKFLLLHYHLGTV

Query:  GGGVLVYLV
        GGGVLVYLV
Subjt:  GGGVLVYLV

XP_002271801.1 PREDICTED: 40S ribosomal protein S29 [Vitis vinifera]1.4e-26100Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY

TrEMBL top hitse value%identityAlignment
A0A0A0K6C5 Uncharacterized protein1.1e-5999.08Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYIDQVNHRPFPLADMSNANSNRRFKSRQLDKFLLLHYHLGTV
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYIDQVNHRP+PLADMSNANSNRRFKSRQLDKFLLLHYHLGTV
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYIDQVNHRPFPLADMSNANSNRRFKSRQLDKFLLLHYHLGTV

Query:  GGGVLVYLV
        GGGVLVYLV
Subjt:  GGGVLVYLV

A0A0S3T7T0 Uncharacterized protein5.4e-2791.67Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYI
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK  + Y+
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYI

A0A1S3V2W1 40S ribosomal protein S297.0e-27100Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY

A0A5A7V7W0 40S ribosomal protein S293.1e-2790.16Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYID
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+ +   D
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYID

A0A6A1UUD7 40S ribosomal protein S293.1e-2768.29Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYIDQVNHRPFPLADMSNANSNRRF
        MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+       + +  + +A+ +   + + F
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYIDQVNHRPFPLADMSNANSNRRF

SwissProt top hitse value%identityAlignment
Q4PM47 40S ribosomal protein S297.5e-1870.37Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YGPGSR CRVC N HGLIRKYGL  CR+CFR  A +IGF K
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q5I7K3 40S ribosomal protein S294.4e-2690.91Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY
        MGHSNVWNSHPKNYG GSR CRVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIKY
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY

Q680P8 40S ribosomal protein S292.6e-2692.73Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKY
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY

Q6F473 40S ribosomal protein S291.7e-1768.52Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH+N+W SHP+ YG GSR+CR C N HGLIRKYGL  CRQCFR  A +IGF K
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q7XYB0 40S ribosomal protein S291.8e-1969.09Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY
        MGH N+W SHP+ YG GSR+C++CGN HGLIRKY +  CRQCFR  AK+IGFIKY
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein1.8e-2792.73Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKY
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY

AT3G44010.1 Ribosomal protein S14p/S29e family protein1.8e-2792.73Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKY
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY

AT4G33865.1 Ribosomal protein S14p/S29e family protein1.8e-2792.73Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKY
Subjt:  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCACTCGAACGTCTGGAATTCGCACCCTAAGAACTACGGCCCCGGCTCTCGCACCTGCCGGGTTTGCGGAAATCCTCATGGTTTGATCAGAAAGTATGGACTTAT
GTGCTGCAGACAGTGCTTCCGTAGCAACGCCAAGGAAATTGGATTCATCAAGTATGGATTAAAGTATATAGATCAAGTTAACCATCGTCCTTTTCCTTTGGCCGACATGT
CCAATGCCAATTCAAATAGAAGGTTTAAGTCACGGCAGTTGGATAAATTCCTCTTGCTGCATTATCATCTAGGCACAGTTGGGGGTGGCGTTTTGGTTTATCTAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGCACTCGAACGTCTGGAATTCGCACCCTAAGAACTACGGCCCCGGCTCTCGCACCTGCCGGGTTTGCGGAAATCCTCATGGTTTGATCAGAAAGTATGGACTTAT
GTGCTGCAGACAGTGCTTCCGTAGCAACGCCAAGGAAATTGGATTCATCAAGTATGGATTAAAGTATATAGATCAAGTTAACCATCGTCCTTTTCCTTTGGCCGACATGT
CCAATGCCAATTCAAATAGAAGGTTTAAGTCACGGCAGTTGGATAAATTCCTCTTGCTGCATTATCATCTAGGCACAGTTGGGGGTGGCGTTTTGGTTTATCTAGTTTAG
Protein sequenceShow/hide protein sequence
MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYGLKYIDQVNHRPFPLADMSNANSNRRFKSRQLDKFLLLHYHLGTVGGGVLVYLV