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CSPI07G07020 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G07020
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPUM-HD domain-containing protein
Genome locationChr7:5112962..5113442
RNA-Seq ExpressionCSPI07G07020
SyntenyCSPI07G07020
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001313 - Pumilio RNA-binding repeat
IPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold
IPR033133 - Pumilio homology domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645845.1 hypothetical protein Csa_017253 [Cucumis sativus]3.0e-4796.94Show/hide
Query:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLS
        MDKYGSNVVEKCLSCCEG+SNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKK++LS
Subjt:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLS

KAG8497997.1 hypothetical protein CXB51_006726 [Gossypium anomalum]9.5e-0936.96Show/hide
Query:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDK
        M+KYGSNVVEKC+ C    ++ II EI+        +++  + YGN+V+Q+ + ++KG +   L + I  H+ VLQ HL+G+ V+  ++  K
Subjt:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDK

KAG9440050.1 hypothetical protein H6P81_020215 [Aristolochia fimbriata]1.9e-0942.55Show/hide
Query:  MDKYGSNVVEKCLSCC-EGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKK
        M K+ SNVVEKCL    E +S  II E+LE      L+Q+  ++YGNFV+Q   S++KG I   +E AI+ +   L  H YG+NV++ I  +K+
Subjt:  MDKYGSNVVEKCLSCC-EGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKK

XP_022148742.1 pumilio homolog 12-like [Momordica charantia]3.0e-1546.94Show/hide
Query:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLS
        + K GS+VVEKCL C E  +  IIFEI+E   ++  IQ+ TNQYGN+V Q  +S+AKG+   LL +AIKS   +L+ H YGR+V+++  + K++S +S
Subjt:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLS

XP_022725062.1 putative pumilio homolog 8, chloroplastic [Durio zibethinus]9.5e-0938.78Show/hide
Query:  MDKYGSNVVEKCL-SCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRL
        M+KYGSNVVEKCL    EG S  II EI+        +++  + YGN+VVQ+ + ++KG +   L + I+ H+  L  HL+G+ V++  +  K + RL
Subjt:  MDKYGSNVVEKCL-SCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRL

TrEMBL top hitse value%identityAlignment
A0A0A0K7S4 PUM-HD domain-containing protein1.5e-4796.94Show/hide
Query:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLS
        MDKYGSNVVEKCLSCCEG+SNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKK++LS
Subjt:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLS

A0A1D1XXP3 Pumilio 122.7e-0941.3Show/hide
Query:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDK
        M KY SNVVEKCL C     +  I  ILE     +L+QI  + YGN+V+Q+ + + KG +     K I+ H   L+ + YGR V+SS  R K
Subjt:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDK

A0A6A2Z6N2 PUM-HD domain-containing protein6.0e-0940.4Show/hide
Query:  DKYGSNVVEKCL-SCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLSV
        +KYGSNVVEKCL    E +S+ II EI+  N  D  +++  + YGN+VVQ+ +S++KG +R  L   I+ H+  LQ + +GR V++  +  K + R  V
Subjt:  DKYGSNVVEKCL-SCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLSV

A0A6J1D5W5 pumilio homolog 12-like1.5e-1546.94Show/hide
Query:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLS
        + K GS+VVEKCL C E  +  IIFEI+E   ++  IQ+ TNQYGN+V Q  +S+AKG+   LL +AIKS   +L+ H YGR+V+++  + K++S +S
Subjt:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLS

A0A6P5XBS2 putative pumilio homolog 8, chloroplastic4.6e-0938.78Show/hide
Query:  MDKYGSNVVEKCL-SCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRL
        M+KYGSNVVEKCL    EG S  II EI+        +++  + YGN+VVQ+ + ++KG +   L + I+ H+  L  HL+G+ V++  +  K + RL
Subjt:  MDKYGSNVVEKCL-SCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRL

SwissProt top hitse value%identityAlignment
Q14671 Pumilio homolog 14.6e-0625.27Show/hide
Query:  KYGSNVVEKCLSCCEGVSNDIIFE---ILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR
        K+ SNVVEKC++        ++ +    +       L  +  +QY N+VVQ ++ +A+   RK++   I+ H   L+++ YG+++++ + +
Subjt:  KYGSNVVEKCLSCCEGVSNDIIFE---ILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR

Q66KI6 Pumilio homolog 13.5e-0624Show/hide
Query:  KYGSNVVEKCLSCCEGVSNDIIFE---ILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLSV
        K+ SNVVEKC++        ++ +    +       L  +  +QY N+VVQ ++ +A+   RK++   I+ H   L+++ YG+++++ + +   K+ + +
Subjt:  KYGSNVVEKCLSCCEGVSNDIIFE---ILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLSV

Q9C5E7 Pumilio homolog 6, chloroplastic1.1e-0729.35Show/hide
Query:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEG--NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR
        + K+ SNV+EKCL     V  D+I + + G     + L+ +  +QYGN+VVQ +        R  L   ++ H   L+++ YG++++S + +
Subjt:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEG--NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR

Q9LJX4 Pumilio homolog 52.6e-0932.56Show/hide
Query:  KYGSNVVEKCLSCCEGVSNDIIFEILEGNGRD--RLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVIS
        KY SNVVEKCL   +    + + E + G   +   L+ +  +Q+ N+VVQ V+ I+K + R++L + +K H   L+++ YG+++++
Subjt:  KYGSNVVEKCLSCCEGVSNDIIFEILEGNGRD--RLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVIS

Q9LVC3 Pumilio homolog 124.9e-0836.96Show/hide
Query:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDK
        M K  SNVVEKCL   +      I   L   G  RL Q+  + YGN+V+Q  +  +KG +  LL  AIK +   L+ + YG+ V+S++   K
Subjt:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDK

Arabidopsis top hitse value%identityAlignment
AT3G20250.1 pumilio 51.8e-1032.56Show/hide
Query:  KYGSNVVEKCLSCCEGVSNDIIFEILEGNGRD--RLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVIS
        KY SNVVEKCL   +    + + E + G   +   L+ +  +Q+ N+VVQ V+ I+K + R++L + +K H   L+++ YG+++++
Subjt:  KYGSNVVEKCLSCCEGVSNDIIFEILEGNGRD--RLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVIS

AT4G25880.1 pumilio 67.7e-0929.35Show/hide
Query:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEG--NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR
        + K+ SNV+EKCL     V  D+I + + G     + L+ +  +QYGN+VVQ +        R  L   ++ H   L+++ YG++++S + +
Subjt:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEG--NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR

AT4G25880.2 pumilio 67.7e-0929.35Show/hide
Query:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEG--NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR
        + K+ SNV+EKCL     V  D+I + + G     + L+ +  +QYGN+VVQ +        R  L   ++ H   L+++ YG++++S + +
Subjt:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEG--NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR

AT4G25880.3 pumilio 67.7e-0929.35Show/hide
Query:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEG--NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR
        + K+ SNV+EKCL     V  D+I + + G     + L+ +  +QYGN+VVQ +        R  L   ++ H   L+++ YG++++S + +
Subjt:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEG--NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR

AT5G56510.1 pumilio 123.5e-0936.96Show/hide
Query:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDK
        M K  SNVVEKCL   +      I   L   G  RL Q+  + YGN+V+Q  +  +KG +  LL  AIK +   L+ + YG+ V+S++   K
Subjt:  MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGTATGGAAGCAATGTAGTGGAAAAATGTCTATCTTGTTGTGAAGGTGTCTCTAATGACATTATCTTTGAAATTTTGGAGGGTAATGGTCGAGATCGACTCAT
CCAAATTTGTACAAACCAATATGGAAATTTTGTTGTTCAAACCGTCATGTCTATTGCTAAGGGAAAAATTCGCAAGTTGCTTGAAAAGGCCATTAAGAGTCATTGGCTTG
TTCTTCAACAACATCTATATGGAAGAAATGTAATTTCATCAATTAGACGTGATAAAAAAAAGTCAAGATTATCGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGTATGGAAGCAATGTAGTGGAAAAATGTCTATCTTGTTGTGAAGGTGTCTCTAATGACATTATCTTTGAAATTTTGGAGGGTAATGGTCGAGATCGACTCAT
CCAAATTTGTACAAACCAATATGGAAATTTTGTTGTTCAAACCGTCATGTCTATTGCTAAGGGAAAAATTCGCAAGTTGCTTGAAAAGGCCATTAAGAGTCATTGGCTTG
TTCTTCAACAACATCTATATGGAAGAAATGTAATTTCATCAATTAGACGTGATAAAAAAAAGTCAAGATTATCGGTTTGA
Protein sequenceShow/hide protein sequence
MDKYGSNVVEKCLSCCEGVSNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKSRLSV