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CSPI07G08020 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G08020
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDiphthamide biosynthesis protein 3-like
Genome locationChr7:5691990..5694053
RNA-Seq ExpressionCSPI07G08020
SyntenyCSPI07G08020
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007872 - DPH-type metal-binding domain
IPR036671 - DPH-type metal-binding domain superfamily
IPR044248 - Diphthamide biosynthesis protein 3/4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137002.1 diphthamide biosynthesis protein 3 [Cucumis sativus]3.5e-44100Show/hide
Query:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
Subjt:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA

XP_008454889.1 PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo]2.5e-4296.47Show/hide
Query:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDM+WN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLD SNQKNNKGLEPSKQHPIVVA
Subjt:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA

XP_022136247.1 diphthamide biosynthesis protein 3-like [Momordica charantia]7.5e-3989.41Show/hide
Query:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDMEWN ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFL  S+QKNNKG++PSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA

XP_022972367.1 diphthamide biosynthesis protein 3-like [Cucurbita maxima]2.0e-3991.76Show/hide
Query:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL  S+ KNNKGL+PSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA

XP_038887330.1 diphthamide biosynthesis protein 3-like [Benincasa hispida]6.2e-4195.29Show/hide
Query:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL  SNQKNNKGLEPSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA

TrEMBL top hitse value%identityAlignment
A0A0A0K4W9 DPH-type MB domain-containing protein1.7e-44100Show/hide
Query:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
Subjt:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA

A0A1S3BZL5 diphthamide biosynthesis protein 3-like1.2e-4296.47Show/hide
Query:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDM+WN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLD SNQKNNKGLEPSKQHPIVVA
Subjt:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA

A0A5A7SJN1 Diphthamide biosynthesis protein 3-like1.2e-4296.47Show/hide
Query:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDM+WN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLD SNQKNNKGLEPSKQHPIVVA
Subjt:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA

A0A6J1C519 diphthamide biosynthesis protein 3-like3.7e-3989.41Show/hide
Query:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDMEWN ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFL  S+QKNNKG++PSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA

A0A6J1I4L9 diphthamide biosynthesis protein 3-like9.6e-4091.76Show/hide
Query:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL  S+ KNNKGL+PSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA

SwissProt top hitse value%identityAlignment
Q21102 DPH3 homolog4.9e-1757.38Show/hide
Query:  YDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED E+++E   + YPCPCGD F+I +E L++GE++A+CPSCSL I VIY+ EDF+
Subjt:  YDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL

Q4P8G2 Diphthamide biosynthesis protein 33.8e-1756.45Show/hide
Query:  YDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLD
        YD++E+EDM ++DE   F YPCPCGD F+IT++ LK  E++ARCPSCSL I V+++  DF D
Subjt:  YDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLD

Q6CMG4 Diphthamide biosynthesis protein 35.8e-1849.4Show/hide
Query:  SYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVV
        +YD+VEIEDM ++ + Q FTYPCPCGD FQI+ +D+  GE+IA CPSCSL I V+++ ED +++  + N   LEP  +  + V
Subjt:  SYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVV

Q74Z32 Diphthamide biosynthesis protein 32.9e-1752.7Show/hide
Query:  YDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEP
        YD+VEIEDM ++ + Q FTYPCPCGD FQI+ +D+  GE+IA CPSCSL I V+Y + D  ++ ++    G+EP
Subjt:  YDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEP

Q9UT33 Diphthamide biosynthesis protein 32.2e-1743.37Show/hide
Query:  YDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
        YD++E+ED  ++     +T+PCPCGD F+I+ EDL+LGE++ARCPSCSL + VIY+ ++F++  N  +          PI++A
Subjt:  YDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA

Arabidopsis top hitse value%identityAlignment
AT2G15910.1 CSL zinc finger domain-containing protein2.0e-3478.05Show/hide
Query:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPI
        MSYDDVEIEDMEWN+E+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDF  +  +KNN   EP  +HP+
Subjt:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPI

AT2G15910.2 CSL zinc finger domain-containing protein1.4e-3577.65Show/hide
Query:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA
        MSYDDVEIEDMEWN+E+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDF  +  +KNN   EP  +HP+ VA
Subjt:  MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTACGACGACGTGGAGATTGAAGACATGGAGTGGAACGACGAACTTCAGGCCTTCACCTACCCTTGCCCCTGCGGCGACTTGTTCCAGATCACCAAGGAGGATCT
TAAGCTCGGTGAAGAGATTGCTCGTTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGATCACTCCAATCAGAAGAATAACAAAGGAC
TTGAGCCCTCCAAACAACACCCTATCGTAGTCGCTTAA
mRNA sequenceShow/hide mRNA sequence
AAAAAAGAATAAAGGGTAAATTGGACGCGGTTTTCCGGAACAATCCGGAGCCCCCAAAACAAAAGAAACCCAAATCCCTCCATCCTCTTCCTTACCTTCCCAACTCGGCG
GTTTCTGACTCGCCTCCGCAACTATGTCCTACGACGACGTGGAGATTGAAGACATGGAGTGGAACGACGAACTTCAGGCCTTCACCTACCCTTGCCCCTGCGGCGACTTG
TTCCAGATCACCAAGGAGGATCTTAAGCTCGGTGAAGAGATTGCTCGTTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGATCACTC
CAATCAGAAGAATAACAAAGGACTTGAGCCCTCCAAACAACACCCTATCGTAGTCGCTTAATAAATATTTCAGAACTGTCGAATTCAAATCATGGCTTTGCCGCAGCAGC
TGAGATGAAATTTTGTTAGCCATTGCCAATTCTGAAGATGTTCTTTGGCATTAAAGTTTCTTCCTTTGCTTCTCATTACTCTTTTACAGAATTGGTCTAGGAAATAGAGG
AAGGTAGAGTTGCGTCTGGAAAAATGTATTAAGGTACTATTTTTGTTCCTTCAAAAAGTAATTTATAAATACTTTATCTTTTCACAATCGAATGTAATGATTGGTGAATT
CTTTTGTCGAAGTAAATCTGATAATCAAGAGAAACTTTAGACATAAAATGGACGAAAGCTCTAATAATCTAAAATGGTTTGAATCTTTTATTTGGTTGTTGAA
Protein sequenceShow/hide protein sequence
MSYDDVEIEDMEWNDELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLDHSNQKNNKGLEPSKQHPIVVA