| GenBank top hits | e value | %identity | Alignment |
|---|
| GAU19483.1 hypothetical protein TSUD_77270 [Trifolium subterraneum] | 9.4e-74 | 33.76 | Show/hide |
Query: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITNS-SGESQSGIDGTTEAT-----GGASSSSTTSKNEQRTYGKPS-------Q
N LP VKLD NY L ++L LP+++ KL+G++ G CP +FIT+S S ++++ +A G +S TT Q + + S Q
Subjt: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITNS-SGESQSGIDGTTEAT-----GGASSSSTTSKNEQRTYGKPS-------Q
Query: GLFGIQSR-------------------------------------------------VLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQNS
L G +R L LD YNP V + ++ +SW+D+Q++LL FE R+E N+
Subjt: GLFGIQSR-------------------------------------------------VLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQNS
Query: QKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNKPTCQVCGKYGHSALNP-TPFVTTYNT-------------NPF-ATPETVID
N N N H SN N+ RG N+ G R GRG+ K CQVCG H A++ F TY+ N F A+ +V D
Subjt: QKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNKPTCQVCGKYGHSALNP-TPFVTTYNT-------------NPF-ATPETVID
Query: SNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADD------------VLEKSGYRKLQ
+WY DSGA+NHVT + +E+ G L D LY +L SV+ +A D ++ K+
Subjt: SNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADD------------VLEKSGYRKLQ
Query: FKHINKNASTFVLSKKANDGASKTV---WYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTS
K + K+ + K N A +V W+RRLGH +VL+ + + C + + + +F FCE+CQ GK H LPF S S + +L+H+D+WGPAP +
Subjt: FKHINKNASTFVLSKKANDGASKTV---WYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTS
Query: TDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLS
+ ++YY+ FVDDFS++TWIYPLK KS ++AF F + QF K IK Q D GGE+ + + + GI R+S PYTS QNG+AERKHRH+TE L+
Subjt: TDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLS
Query: LLAQATLPLNFWWDAFITAKSLINGLPT
LLAQA +PL++WW+AF TA LIN LP+
Subjt: LLAQATLPLNFWWDAFITAKSLINGLPT
|
|
| KYP50444.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] | 1.9e-74 | 37.5 | Show/hide |
Query: SRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHNSNQSN--GNSQRGGNNFHNSGSRGPGRGRGNKPTCQ
++ L LD YNP V + K +++W++MQ++LL +E RLE N+Q N N + + +SN G + G N G RG GR ++ CQ
Subjt: SRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHNSNQSN--GNSQRGGNNFHNSGSRGPGRGRGNKPTCQ
Query: VCGKYGHSA-------------------LNPTPFVTTYNTNPF-ATPETVIDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------
VC K GH+A + YN N + A+P TV D +WY DSGA+NHVT D + + +E G
Subjt: VCGKYGHSA-------------------LNPTPFVTTYNTNPF-ATPETVIDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------
Query: ----------LRDGLY------HLESVAVIADDVLEKSGYRKLQFKHINKNASTFVLSKKANDG-------------------ASKTVWYRRLGHSTMQV
L+D LY +L S++ + D + + +K +L K DG + K W+R+LGH +V
Subjt: ----------LRDGLY------HLESVAVIADDVLEKSGYRKLQFKHINKNASTFVLSKKANDG-------------------ASKTVWYRRLGHSTMQV
Query: LNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYV
LN + K+CN+ + +F FCE+CQ GK HNLPF S S + DL+HSD+WGPAP +S ++YY+LF+DD+S++TWIYPLK KS +AF F V
Subjt: LNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYV
Query: KTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
+ QF K IK Q D GGEF + + K GI R S PYTSAQNG+AERKHRHV E+ L+LLAQA +PL++WW+AF TA LIN LPT
Subjt: KTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
|
|
| PNX76291.1 gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium pratense] | 1.1e-74 | 34.12 | Show/hide |
Query: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFIT---------------------------NS--------------------SGE
N LP VKLD NY L Q++ LPI++ +L+G++ G+ CP +FIT NS +
Subjt: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFIT---------------------------NS--------------------SGE
Query: SQSGIDGTTEATGGASSSSTTSKNEQ----------------RTYGKPSQGLFGIQSRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQN
S +G ++ T S +T K E + G P + + L LD YNP V + ++ +SW+D+Q++LL FE R+E N
Subjt: SQSGIDGTTEATGGASSSSTTSKNEQ----------------RTYGKPSQGLFGIQSRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQN
Query: SQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSR------GPGRGRGNKPTCQVCGKYGHSALNP-TPFVTTYNT-------------NPF-A
S N N H N+ N N+ G+N + GS G GRGR K TCQVCG H A++ F TY+ N F A
Subjt: SQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSR------GPGRGRGNKPTCQVCGKYGHSALNP-TPFVTTYNT-------------NPF-A
Query: TPETVIDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADD--VLEKSGYR------
+ ++ D +WY DSGA+NHVT N SE+ G L D LY +L SV+ +A D +L +
Subjt: TPETVIDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADD--VLEKSGYR------
Query: KLQFKHINKNA---STFVLSKKANDG--ASKTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGP
KL K I + + LS+K + + K W+R+LGH +VL+ + K CN+ ++ + F FCE+CQ GK H LPF S S + +L+H+D+WGP
Subjt: KLQFKHINKNA---STFVLSKKANDG--ASKTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGP
Query: APFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVT
AP S+ ++YY+ F+DDF+++TWIYPLK KS AF F V+ QF+K IK Q D GGE+ + + GI R+S PYTS QNG+AERKHRH+
Subjt: APFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVT
Query: ETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
E L+LLAQA +PLN+WW+AF TA LIN LP+
Subjt: ETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
|
|
| PNX78574.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense] | 1.8e-69 | 33.12 | Show/hide |
Query: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITN--SSGESQSGIDGTTEA-----TGGASSSSTTSKNEQRTYGKPSQGLF---
N LP V LD N+ L ++L LPI++ +L+G++ G CP +FIT+ +SG+ + G +A G ++ TT Q + + S+ L+
Subjt: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITN--SSGESQSGIDGTTEA-----TGGASSSSTTSKNEQRTYGKPSQGLF---
Query: ------GIQSRVL-LR----------------------------------------------LDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQN
+SRV+ LR LD YNP V + + N+SW+D+Q++LL FE RL+ N
Subjt: ------GIQSRVL-LR----------------------------------------------LDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQN
Query: SQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNKPTCQVCGKYGHSAL------NPTPFVTTYNT---------NPF-ATPETV
S N N N N N G++F N+ G G+GR + CQVC K+GH+A+ + + ++Y+ N F A+
Subjt: SQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNKPTCQVCGKYGHSAL------NPTPFVTTYNT---------NPF-ATPETV
Query: IDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADD---VLEKSG-----YRKLQFK
D WY DSGA+NHVT +E SG L D LY +L SV+ + D ++E KL K
Subjt: IDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADD---VLEKSG-----YRKLQFK
Query: HINKNASTFVLSKKANDGAS-----------KTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWG
+ + L + +N + K W+R+LGH + VL+ + K+CN+ + + F FCE+CQLGK+H LPF S S + +LIH+D+WG
Subjt: HINKNASTFVLSKKANDGAS-----------KTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWG
Query: PAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHV
PAP S ++YY+ F+DD S++TWIYPLK KS + AF F V+ QF K IK Q D GGEF + + + GI R+S PYTS QNG+AERKHRHV
Subjt: PAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHV
Query: TETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
E L+LLAQA + L++WW+AF TA LIN LP+
Subjt: TETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
|
|
| PNX94503.1 putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense] | 5.3e-69 | 32.03 | Show/hide |
Query: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITNSSG-------------------------------------ESQSGIDGTTE
N LP VKLD N+ L ++L LP+++ K +G++ G CP +F+T+ E+ + +
Subjt: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITNSSG-------------------------------------ESQSGIDGTTE
Query: ATGGASSSS----------TTSKNEQ----------------RTYGKPSQGLFGIQSRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQN
+ GA + S T K E + G P + + L LD YNP V + ++NISW+D Q++LL FE RL+ N
Subjt: ATGGASSSS----------TTSKNEQ----------------RTYGKPSQGLFGIQSRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQN
Query: SQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGN-----KPTCQVCGKYGHSALN-PTPFVTTYNTNP------------FATPE
N N + N N + N RGG NS GRGR +P CQ+CGK+GH+A F +Y A+P
Subjt: SQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGN-----KPTCQVCGKYGHSALN-PTPFVTTYNTNP------------FATPE
Query: TVIDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADDVLEKSGYRKLQFKHINKNA
D WY DSGA+NHVT L + +E +G LR+ LY +L SV+ + D + + +K
Subjt: TVIDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADDVLEKSGYRKLQFKHINKNA
Query: STFVLSKKANDG--------------------ASKTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSD
+L + DG + K +W+R+LGH +VL + K N+ I+ + F FCE+CQ GK H LPF S S + DLIH+D
Subjt: STFVLSKKANDG--------------------ASKTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSD
Query: LWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKH
+WGPAP S +++YY+ F+DDFS++TWI+PLK KS + AF F V+ QF K IK + D GGE+ + GI ++S PYTS QNG+AERKH
Subjt: LWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKH
Query: RHVTETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
RHVTE L+LLAQA +PL++WW+AF TA LIN LP+
Subjt: RHVTETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A151S6M8 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 9.2e-75 | 37.5 | Show/hide |
Query: SRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHNSNQSN--GNSQRGGNNFHNSGSRGPGRGRGNKPTCQ
++ L LD YNP V + K +++W++MQ++LL +E RLE N+Q N N + + +SN G + G N G RG GR ++ CQ
Subjt: SRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHNSNQSN--GNSQRGGNNFHNSGSRGPGRGRGNKPTCQ
Query: VCGKYGHSA-------------------LNPTPFVTTYNTNPF-ATPETVIDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------
VC K GH+A + YN N + A+P TV D +WY DSGA+NHVT D + + +E G
Subjt: VCGKYGHSA-------------------LNPTPFVTTYNTNPF-ATPETVIDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------
Query: ----------LRDGLY------HLESVAVIADDVLEKSGYRKLQFKHINKNASTFVLSKKANDG-------------------ASKTVWYRRLGHSTMQV
L+D LY +L S++ + D + + +K +L K DG + K W+R+LGH +V
Subjt: ----------LRDGLY------HLESVAVIADDVLEKSGYRKLQFKHINKNASTFVLSKKANDG-------------------ASKTVWYRRLGHSTMQV
Query: LNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYV
LN + K+CN+ + +F FCE+CQ GK HNLPF S S + DL+HSD+WGPAP +S ++YY+LF+DD+S++TWIYPLK KS +AF F V
Subjt: LNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYV
Query: KTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
+ QF K IK Q D GGEF + + K GI R S PYTSAQNG+AERKHRHV E+ L+LLAQA +PL++WW+AF TA LIN LPT
Subjt: KTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
|
|
| A0A2K3LCM1 Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) | 5.4e-75 | 34.12 | Show/hide |
Query: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFIT---------------------------NS--------------------SGE
N LP VKLD NY L Q++ LPI++ +L+G++ G+ CP +FIT NS +
Subjt: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFIT---------------------------NS--------------------SGE
Query: SQSGIDGTTEATGGASSSSTTSKNEQ----------------RTYGKPSQGLFGIQSRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQN
S +G ++ T S +T K E + G P + + L LD YNP V + ++ +SW+D+Q++LL FE R+E N
Subjt: SQSGIDGTTEATGGASSSSTTSKNEQ----------------RTYGKPSQGLFGIQSRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQN
Query: SQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSR------GPGRGRGNKPTCQVCGKYGHSALNP-TPFVTTYNT-------------NPF-A
S N N H N+ N N+ G+N + GS G GRGR K TCQVCG H A++ F TY+ N F A
Subjt: SQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSR------GPGRGRGNKPTCQVCGKYGHSALNP-TPFVTTYNT-------------NPF-A
Query: TPETVIDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADD--VLEKSGYR------
+ ++ D +WY DSGA+NHVT N SE+ G L D LY +L SV+ +A D +L +
Subjt: TPETVIDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADD--VLEKSGYR------
Query: KLQFKHINKNA---STFVLSKKANDG--ASKTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGP
KL K I + + LS+K + + K W+R+LGH +VL+ + K CN+ ++ + F FCE+CQ GK H LPF S S + +L+H+D+WGP
Subjt: KLQFKHINKNA---STFVLSKKANDG--ASKTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGP
Query: APFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVT
AP S+ ++YY+ F+DDF+++TWIYPLK KS AF F V+ QF+K IK Q D GGE+ + + GI R+S PYTS QNG+AERKHRH+
Subjt: APFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVT
Query: ETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
E L+LLAQA +PLN+WW+AF TA LIN LP+
Subjt: ETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
|
|
| A0A2K3LJ49 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 8.9e-70 | 33.12 | Show/hide |
Query: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITN--SSGESQSGIDGTTEA-----TGGASSSSTTSKNEQRTYGKPSQGLF---
N LP V LD N+ L ++L LPI++ +L+G++ G CP +FIT+ +SG+ + G +A G ++ TT Q + + S+ L+
Subjt: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITN--SSGESQSGIDGTTEA-----TGGASSSSTTSKNEQRTYGKPSQGLF---
Query: ------GIQSRVL-LR----------------------------------------------LDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQN
+SRV+ LR LD YNP V + + N+SW+D+Q++LL FE RL+ N
Subjt: ------GIQSRVL-LR----------------------------------------------LDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQN
Query: SQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNKPTCQVCGKYGHSAL------NPTPFVTTYNT---------NPF-ATPETV
S N N N N N G++F N+ G G+GR + CQVC K+GH+A+ + + ++Y+ N F A+
Subjt: SQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNKPTCQVCGKYGHSAL------NPTPFVTTYNT---------NPF-ATPETV
Query: IDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADD---VLEKSG-----YRKLQFK
D WY DSGA+NHVT +E SG L D LY +L SV+ + D ++E KL K
Subjt: IDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADD---VLEKSG-----YRKLQFK
Query: HINKNASTFVLSKKANDGAS-----------KTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWG
+ + L + +N + K W+R+LGH + VL+ + K+CN+ + + F FCE+CQLGK+H LPF S S + +LIH+D+WG
Subjt: HINKNASTFVLSKKANDGAS-----------KTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWG
Query: PAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHV
PAP S ++YY+ F+DD S++TWIYPLK KS + AF F V+ QF K IK Q D GGEF + + + GI R+S PYTS QNG+AERKHRHV
Subjt: PAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHV
Query: TETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
E L+LLAQA + L++WW+AF TA LIN LP+
Subjt: TETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
|
|
| A0A2K3MUJ9 Putative retrotransposon Ty1-copia subclass protein (Fragment) | 2.6e-69 | 32.03 | Show/hide |
Query: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITNSSG-------------------------------------ESQSGIDGTTE
N LP VKLD N+ L ++L LP+++ K +G++ G CP +F+T+ E+ + +
Subjt: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITNSSG-------------------------------------ESQSGIDGTTE
Query: ATGGASSSS----------TTSKNEQ----------------RTYGKPSQGLFGIQSRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQN
+ GA + S T K E + G P + + L LD YNP V + ++NISW+D Q++LL FE RL+ N
Subjt: ATGGASSSS----------TTSKNEQ----------------RTYGKPSQGLFGIQSRVLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQN
Query: SQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGN-----KPTCQVCGKYGHSALN-PTPFVTTYNTNP------------FATPE
N N + N N + N RGG NS GRGR +P CQ+CGK+GH+A F +Y A+P
Subjt: SQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGN-----KPTCQVCGKYGHSALN-PTPFVTTYNTNP------------FATPE
Query: TVIDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADDVLEKSGYRKLQFKHINKNA
D WY DSGA+NHVT L + +E +G LR+ LY +L SV+ + D + + +K
Subjt: TVIDSNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADDVLEKSGYRKLQFKHINKNA
Query: STFVLSKKANDG--------------------ASKTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSD
+L + DG + K +W+R+LGH +VL + K N+ I+ + F FCE+CQ GK H LPF S S + DLIH+D
Subjt: STFVLSKKANDG--------------------ASKTVWYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSD
Query: LWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKH
+WGPAP S +++YY+ F+DDFS++TWI+PLK KS + AF F V+ QF K IK + D GGE+ + GI ++S PYTS QNG+AERKH
Subjt: LWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKH
Query: RHVTETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
RHVTE L+LLAQA +PL++WW+AF TA LIN LP+
Subjt: RHVTETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
|
|
| A0A2Z6MBG6 Integrase catalytic domain-containing protein | 4.6e-74 | 33.76 | Show/hide |
Query: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITNS-SGESQSGIDGTTEAT-----GGASSSSTTSKNEQRTYGKPS-------Q
N LP VKLD NY L ++L LP+++ KL+G++ G CP +FIT+S S ++++ +A G +S TT Q + + S Q
Subjt: NQLP---YVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITNS-SGESQSGIDGTTEAT-----GGASSSSTTSKNEQRTYGKPS-------Q
Query: GLFGIQSR-------------------------------------------------VLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQNS
L G +R L LD YNP V + ++ +SW+D+Q++LL FE R+E N+
Subjt: GLFGIQSR-------------------------------------------------VLLRLDEVYNPATVVIQGKSNISWLDMQSELLIFEKRLEHQNS
Query: QKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNKPTCQVCGKYGHSALNP-TPFVTTYNT-------------NPF-ATPETVID
N N N H SN N+ RG N+ G R GRG+ K CQVCG H A++ F TY+ N F A+ +V D
Subjt: QKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNKPTCQVCGKYGHSALNP-TPFVTTYNT-------------NPF-ATPETVID
Query: SNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADD------------VLEKSGYRKLQ
+WY DSGA+NHVT + +E+ G L D LY +L SV+ +A D ++ K+
Subjt: SNWYIDSGATNHVTVDYSNLSNPSEYSGL-------------------------LRDGLY------HLESVAVIADD------------VLEKSGYRKLQ
Query: FKHINKNASTFVLSKKANDGASKTV---WYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTS
K + K+ + K N A +V W+RRLGH +VL+ + + C + + + +F FCE+CQ GK H LPF S S + +L+H+D+WGPAP +
Subjt: FKHINKNASTFVLSKKANDGASKTV---WYRRLGHSTMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTS
Query: TDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLS
+ ++YY+ FVDDFS++TWIYPLK KS ++AF F + QF K IK Q D GGE+ + + + GI R+S PYTS QNG+AERKHRH+TE L+
Subjt: TDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLS
Query: LLAQATLPLNFWWDAFITAKSLINGLPT
LLAQA +PL++WW+AF TA LIN LP+
Subjt: LLAQATLPLNFWWDAFITAKSLINGLPT
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 1.6e-23 | 30 | Show/hide |
Query: VWYRRLGH---------------STMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKP--AQSFDLIHSDLWGPAPFTSTDDYRYYILF
+W+ R GH S +LN + C + CE C GK LPF + K + ++HSD+ GP + DD Y+++F
Subjt: VWYRRLGH---------------STMQVLNYIAKVCNLPINGNGDFMFCESCQLGKTHNLPFNISRSKP--AQSFDLIHSDLWGPAPFTSTDDYRYYILF
Query: VDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFI--QIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQATLP
VD F+ Y Y +K+KS F+ F+ + F + DNG E++ ++ C K GI L+ P+T NG +ER R +TE + ++++ A L
Subjt: VDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFI--QIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQATLP
Query: LNFWWDAFITAKSLINGLPT
+FW +A +TA LIN +P+
Subjt: LNFWWDAFITAKSLINGLPT
|
|
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.3e-29 | 25.31 | Show/hide |
Query: NPATVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNK--PTCQVCGKYGH---S
N AT ++ GK+ I D+ S LL+ EK + +Q + R G SY QR NN+ SG+RG + R C C + GH
Subjt: NPATVVIQGKSNISWLDMQSELLIFEKRLEHQNSQKNHANNDARQPGNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNK--PTCQVCGKYGH---S
Query: ALNP---------------TPFVTTYNTNP--FATPETVI------DSNWYIDSGATNHVT---------------------VDYSNLSNPSEY------
NP T + N N F E +S W +D+ A++H T YS ++ +
Subjt: ALNP---------------TPFVTTYNTNP--FATPETVI------DSNWYIDSGATNHVT---------------------VDYSNLSNPSEY------
Query: -SGLLRDGLYHLESVA--VIADDVLEKSGYRK-LQFKHINKNASTFVLSK--------------------KANDGASKTVWYRRLGHSTMQVLNYIAKVC
L+ + H+ + +I+ L++ GY + + V++K A D S +W++R+GH + + L +AK
Subjt: -SGLLRDGLYHLESVA--VIADDVLEKSGYRK-LQFKHINKNASTFVLSK--------------------KANDGASKTVWYRRLGHSTMQVLNYIAKVC
Query: NLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTI
+ C+ C GK H + F S + DL++SD+ GP S +Y++ F+DD S+ W+Y LK K + F+ F V+ + + +
Subjt: NLPINGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTI
Query: KAFQFDNGGEFI--QIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
K + DNGGE+ + C+ GI + P T NG AER +R + E S+L A LP +FW +A TA LIN P+
Subjt: KAFQFDNGGEFI--QIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQATLPLNFWWDAFITAKSLINGLPT
|
|
| Q07163 Transposon TyH3 Gag-Pol polyprotein | 7.9e-15 | 24.53 | Show/hide |
Query: YRRLGHSTMQVLNYIAKVCNLPINGNGDFMF-------CESCQLGKT----HNLPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYT
+R L H+ Q + Y K + D + C C +GK+ H + + F +H+D++GP Y+I F D+ +K+
Subjt: YRRLGHSTMQVLNYIAKVCNLPINGNGDFMF-------CESCQLGKT----HNLPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYT
Query: WIYPL--KHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQ--IHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQATLPLNFWWD
W+YPL + + L+ F + ++K QF ++ Q D G E+ +H K GI + S +G AER +R + + + L + LP + W+
Subjt: WIYPL--KHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQ--IHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQATLPLNFWWD
Query: AFITAKSLINGL
A + + N L
Subjt: AFITAKSLINGL
|
|
| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.6e-47 | 29.82 | Show/hide |
Query: RVLLRLDEVYNPATVVIQGKSNISWL-DMQSELLIFEKRL----------------EHQNSQKNHANNDARQPGNSYPHNSNQSNGNS-QRGGNNFH-NS
RVL L E Y P I K L ++ LL E ++ H+N+ + NN+ + N Y + +N +N Q+ NFH N+
Subjt: RVLLRLDEVYNPATVVIQGKSNISWL-DMQSELLIFEKRL----------------EHQNSQKNHANNDARQPGNSYPHNSNQSNGNS-QRGGNNFH-NS
Query: GSRGPGRGRGNKPTCQVCGKYGHSALN----------------PTPFVTTYNTNPFATPETVIDSNWYIDSGATNHVTVDYSNLSNPSEYSG----LLRD
P G+ CQ+CG GHSA P+PF A +NW +DSGAT+H+T D++NLS Y+G ++ D
Subjt: GSRGPGRGRGNKPTCQVCGKYGHSALN----------------PTPFVTTYNTNPFATPETVIDSNWYIDSGATNHVTVDYSNLSNPSEYSG----LLRD
Query: G-------------------------LY----HLESVAVI----ADDVLEKSGYRKLQFKHIN-------------------KNASTFVLSKKANDGASK
G LY H ++V A+ V + Q K +N ++ L + A+
Subjt: G-------------------------LY----HLESVAVI----ADDVLEKSGYRKLQFKHIN-------------------KNASTFVLSKKANDGASK
Query: TVWYRRLGHSTMQVLNYIAKVCNLPI-NGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKH
+ W+ RLGH +LN + +L + N + F+ C C + K++ +PF+ S + + I+SD+W +P S D+YRYY++FVD F++YTW+YPLK
Subjt: TVWYRRLGHSTMQVLNYIAKVCNLPI-NGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAPFTSTDDYRYYILFVDDFSKYTWIYPLKH
Query: KSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQATLPLNFWWDAFITAKSLING
KS E F F ++ +F I F DNGGEF+ + ++ GI S P+T NG +ERKHRH+ ET L+LL+ A++P +W AF A LIN
Subjt: KSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTETSLSLLAQATLPLNFWWDAFITAKSLING
Query: LPT
LPT
Subjt: LPT
|
|
| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 2.5e-45 | 28.68 | Show/hide |
Query: LNQLPYVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITNSSGES---------------QSGIDGTTE-----ATGGASSSSTTSKNEQRTY
+N KL NYL+ + Y+L G L G P PP I + S I G A A++++ + ++ Y
Subjt: LNQLPYVKLDPGNYLLCQTLALPILKSYKLEGHLTGENPCPPKFITNSSGES---------------QSGIDGTTE-----ATGGASSSSTTSKNEQRTY
Query: GKPSQG---------------LFGIQ-------SRVLLRLDEVYNPATVVIQGKSN-ISWLDMQSELLIFEKRLEHQNSQK---------NHANNDARQP
PS G L G RVL L + Y P I K S ++ L+ E +L NS + H N + +
Subjt: GKPSQG---------------LFGIQ-------SRVLLRLDEVYNPATVVIQGKSN-ISWLDMQSELLIFEKRLEHQNSQK---------NHANNDARQP
Query: GNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNKP---TCQVCGKYGHSALNPT---PFVTTYN----TNPF---------ATPETVIDSNWYIDSG
N+ N N +N N++ +SGSR R KP CQ+C GHSA F +T N T+PF A +NW +DSG
Subjt: GNSYPHNSNQSNGNSQRGGNNFHNSGSRGPGRGRGNKP---TCQVCGKYGHSALNPT---PFVTTYN----TNPF---------ATPETVIDSNWYIDSG
Query: ATNHVTVDYSNLSNPSEYSG----LLRDG----LYHLESVA------------VIADDVLEK---SGYR--------------KLQFKHINKN-------
AT+H+T D++NLS Y+G ++ DG + H S + V+ + K S YR Q K +N
Subjt: ATNHVTVDYSNLSNPSEYSG----LLRDG----LYHLESVA------------VIADDVLEK---SGYR--------------KLQFKHINKN-------
Query: ----------ASTFVLSKKAN--DGASKTVWYRRLGHSTMQVLNYIAKVCNLPI-NGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAP
AS+ +S A+ A+ + W+ RLGH ++ +LN + +LP+ N + + C C + K+H +PF+ S ++ + I+SD+W +P
Subjt: ----------ASTFVLSKKAN--DGASKTVWYRRLGHSTMQVLNYIAKVCNLPI-NGNGDFMFCESCQLGKTHNLPFNISRSKPAQSFDLIHSDLWGPAP
Query: FTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTET
S D+YRYY++FVD F++YTW+YPLK KS + F F + V+ +F I DNGGEF+ + ++ GI S P+T NG +ERKHRH+ E
Subjt: FTSTDDYRYYILFVDDFSKYTWIYPLKHKSVALEAFKHFITYVKTQFTKTIKAFQFDNGGEFIQIHHMCNKMGIVSRLSRPYTSAQNGQAERKHRHVTET
Query: SLSLLAQATLPLNFWWDAFITAKSLINGLPT
L+LL+ A++P +W AF A LIN LPT
Subjt: SLSLLAQATLPLNFWWDAFITAKSLINGLPT
|
|
