; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI07G08360 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G08360
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr7:6140377..6141117
RNA-Seq ExpressionCSPI07G08360
SyntenyCSPI07G08360
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN74951.1 hypothetical protein VITISV_030567, partial [Vitis vinifera]4.0e-9367.21Show/hide
Query:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV
        MDLFGPSR  S GG  YA+VIVDDFSR+TWVL +  K +A   F  F  +VQNEKGF I+ IRSDHG EF+N  F+ +C ++G +HNFS+PRTPQQNGVV
Subjt:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV

Query:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA
        ERKNRTLQE AR+MLNE  LPKYFWAEAVNT+CYV NR+L+RP L KTPYELW  K PNI YFKVFGCKCFILN K+ LGKFD+K+DVGIFLGYS++SKA
Subjt:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA

Query:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV
        +RVFNK+T+V+EESIHV+FDES N++       DD  LE   G L +
Subjt:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV

RVW35763.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.0e-9367.21Show/hide
Query:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV
        MDLFGPSR  S GG  YA+VIVDDFSR+TWVL +  K +A   F  F  +VQNEKGF I+ IRSDHG EF+N  F+ +C ++G +HNFS+PRTPQQNGVV
Subjt:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV

Query:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA
        ERKNRTLQE AR+MLNE  LPKYFWAEAVNT+CYV NR+L+RP L KTPYELW  K PNI YFKVFGCKCFILN K+ LGKFD+K+DVGIFLGYS++SKA
Subjt:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA

Query:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV
        +RVFNK+T+V+EESIHV+FDES N++       DD  LE   G L +
Subjt:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV

RVW71911.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.0e-9367.21Show/hide
Query:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV
        MDLFGPSR  S GG  YA+VIVDDFSR+TWVL +  K +A   F  F  +VQNEKGF I+ IRSDHG EF+N  F+ +C ++G +HNFS+PRTPQQNGVV
Subjt:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV

Query:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA
        ERKNRTLQE AR+MLNE  LPKYFWAEAVNT+CYV NR+L+RP L KTPYELW  K PNI YFKVFGCKCFILN K+ LGKFD+K+DVGIFLGYS++SKA
Subjt:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA

Query:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV
        +RVFNK+T+V+EESIHV+FDES N++       DD  LE   G L +
Subjt:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV

XP_024024455.1 uncharacterized protein LOC112092461 [Morus notabilis]8.1e-10274.15Show/hide
Query:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV
        MDLFGPSR  S GG +YAFVIVDDFSR+TWV+ +  KD+ALK+F+ F KRVQNE+G+ I+ I+SDHGGEFDNDAF+  C ENG+ HNFS+PRTPQQNGVV
Subjt:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV

Query:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA
        ERKNR LQE ARSMLNE GLPKYFWAEAVNT+CY+ NRVL+RP +DKTPYELW G+ PNIGYF+VFGCKCFILN K+ LGKFD+K+DVGIFLGYS+TSKA
Subjt:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA

Query:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDDL
        YRVFNK+TLV+EES+HVVFDE+ N    +S+  DDL
Subjt:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDDL

XP_042983398.1 uncharacterized protein LOC122312814, partial [Carya illinoinensis]3.4e-9272.4Show/hide
Query:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV
        MDLFGP+R+AS GG YYAFVIVDDFSR+TWV+ + HKD+A  +F    KR+QNEKG+ IS IRSD G EF N   + FC+ENGF HNFS+PRTPQQNGVV
Subjt:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV

Query:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA
        ERKNR+LQE AR+MLNE  LP YFWAEAV+TACYV NRV++R  LDKTPYELW+ K PNIGYF VFGCKCFILN+++ LGKFD+K+D GIFLGYS+ SKA
Subjt:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA

Query:  YRVFNKKTLVIEESIHVVFDE
        YRVFNKKTL ++ES+HVVFDE
Subjt:  YRVFNKKTLVIEESIHVVFDE

TrEMBL top hitse value%identityAlignment
A0A438DJX8 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-9367.21Show/hide
Query:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV
        MDLFGPSR  S GG  YA+VIVDDFSR+TWVL +  K +A   F  F  +VQNEKGF I+ IRSDHG EF+N  F+ +C ++G +HNFS+PRTPQQNGVV
Subjt:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV

Query:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA
        ERKNRTLQE AR+MLNE  LPKYFWAEAVNT+CYV NR+L+RP L KTPYELW  K PNI YFKVFGCKCFILN K+ LGKFD+K+DVGIFLGYS++SKA
Subjt:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA

Query:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV
        +RVFNK+T+V+EESIHV+FDES N++       DD  LE   G L +
Subjt:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV

A0A438GI90 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-9367.21Show/hide
Query:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV
        MDLFGPSR  S GG  YA+VIVDDFSR+TWVL +  K +A   F  F  +VQNEKGF I+ IRSDHG EF+N  F+ +C ++G +HNFS+PRTPQQNGVV
Subjt:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV

Query:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA
        ERKNRTLQE AR+MLNE  LPKYFWAEAVNT+CYV NR+L+RP L KTPYELW  K PNI YFKVFGCKCFILN K+ LGKFD+K+DVGIFLGYS++SKA
Subjt:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA

Query:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV
        +RVFNK+T+V+EESIHV+FDES N++       DD  LE   G L +
Subjt:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV

A5B1P9 Uncharacterized protein3.7e-9267.21Show/hide
Query:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV
        MDLFG SR  S GG  YAFVIVDDFSR+TWVL +  K++A   F  F  +VQNEKGF I+ IRSDHG EF+N  F+ +C E+G +HNFS+PRTPQQNGVV
Subjt:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV

Query:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA
        ERKNRTLQE AR+MLNE  LPKYFWAEAVNT+CYV NR+L+RP L KTP ELW  K PNI YFKVFGCKCFILN K+ LGKFD+K+DVGIFLGYS++SKA
Subjt:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA

Query:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV
        +RVFNK+T+V+EESIHV+FDES N++       DD  LE   G L +
Subjt:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV

A5BS59 Uncharacterized protein2.6e-9065.18Show/hide
Query:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV
        MDLFGPSR  S GG  Y +VIVDDFSR+TWVL +  K +A   F  F  +VQNEKGF I+ IRSDHG EF+N  F+ +C ++G +HNFS+PRTPQQNGVV
Subjt:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV

Query:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA
        ERKNRTLQE AR+MLNE  LPKYFWAE VNT+CYV +R+L+RP L KTPYELW  K PNI YFKVFGCKCFILN K+ LGKFD+K+DVGIFLGYS++SK 
Subjt:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA

Query:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV
        +RVFNK+T+V+EESIHV+F ES N++       DD  LE   G L +
Subjt:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV

A5BSC1 Uncharacterized protein (Fragment)1.9e-9367.21Show/hide
Query:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV
        MDLFGPSR  S GG  YA+VIVDDFSR+TWVL +  K +A   F  F  +VQNEKGF I+ IRSDHG EF+N  F+ +C ++G +HNFS+PRTPQQNGVV
Subjt:  MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVV

Query:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA
        ERKNRTLQE AR+MLNE  LPKYFWAEAVNT+CYV NR+L+RP L KTPYELW  K PNI YFKVFGCKCFILN K+ LGKFD+K+DVGIFLGYS++SKA
Subjt:  ERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKA

Query:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV
        +RVFNK+T+V+EESIHV+FDES N++       DD  LE   G L +
Subjt:  YRVFNKKTLVIEESIHVVFDESWNNVSNESICSDD--LEKDFGDLLV

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.8e-3235.19Show/hide
Query:  DLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVVE
        D+ GP    +     Y  + VD F+ +    +IK+K D    F  F  + +      +  +  D+G E+ ++  + FC + G S++ + P TPQ NGV E
Subjt:  DLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVVE

Query:  RKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLD--KTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTS-
        R  RT+ E AR+M++   L K FW EAV TA Y+ NR+  R  +D  KTPYE+WH K P + + +VFG   ++ + K K GKFD K+   IF+GY     
Subjt:  RKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLD--KTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTS-

Query:  KAYRVFNKKTLVIEESIHVVFDESWNNVSNESI
        K +   N+K +V  +   VV DE+ N V++ ++
Subjt:  KAYRVFNKKTLVIEESIHVVFDESWNNVSNESI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.5e-4241.18Show/hide
Query:  DLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVVE
        D+ GP  I S GGN Y    +DD SR  WV ++K KD   + F  F   V+ E G  + ++RSD+GGE+ +  F+ +C  +G  H  + P TPQ NGV E
Subjt:  DLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVVE

Query:  RKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKAY
        R NRT+ E  RSML    LPK FW EAV TACY+ NR    P   + P  +W  K  +  + KVFGC+ F    KE+  K D K+   IF+GY      Y
Subjt:  RKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKAY

Query:  RVFNKKTLVIEESIHVVFDES
        R+++     +  S  VVF ES
Subjt:  RVFNKKTLVIEESIHVVFDES

Q12491 Transposon Ty2-B Gag-Pol polyprotein3.6e-1227.05Show/hide
Query:  DLFGPSRIASYGGNYYAFVIVDDFSRFTWV--LMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGV
        D+FGP          Y     D+ +RF WV  L  + ++  L  F S    ++N+    +  I+ D G E+ N     F    G +  +++    + +GV
Subjt:  DLFGPSRIASYGGNYYAFVIVDDFSRFTWV--LMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGV

Query:  VERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKV--FGCKCFILNNKEKLGKFDSKTDVGIFLGYSST
         ER NRTL    R++L+  GLP + W  AV  +  + N  LV P  DK+  +  H  +  +    +  FG +  I+NN     K   +   G  L  S  
Subjt:  VERKNRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKV--FGCKCFILNNKEKLGKFDSKTDVGIFLGYSST

Query:  SKAYRVF
        S  Y ++
Subjt:  SKAYRVF

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.1e-2935.43Show/hide
Query:  SRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVVERKNRT
        S I S+    Y  + VD F+R+TW+  +K K    ++FI+F   ++N     I    SD+GGEF   A   +  ++G SH  S P TP+ NG+ ERK+R 
Subjt:  SRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVVERKNRT

Query:  LQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLD-KTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKAYRVFN
        + E   ++L+   +PK +W  A   A Y+ NR L  P L  ++P++   G  PN    +VFGC C+         K D K+   +FLGYS T  AY   +
Subjt:  LQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLD-KTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKAYRVFN

Query:  KKTLVIEESIHVVFDESWNNVSN
         +T  +  S HV FDE+    SN
Subjt:  KKTLVIEESIHVVFDESWNNVSN

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.2e-2835.19Show/hide
Query:  SRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVVERKNRT
        S I S     Y  + VD F+R+TW+  +K K     +FI F   V+N     I  + SD+GGEF     + +  ++G SH  S P TP+ NG+ ERK+R 
Subjt:  SRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVVERKNRT

Query:  LQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLD-KTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKAYRVFN
        + E   ++L+   +PK +W  A + A Y+ NR L  P L  ++P++   G+ PN    KVFGC C+         K + K+    F+GYS T  AY   +
Subjt:  LQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLD-KTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKAYRVFN

Query:  KKTLVIEESIHVVFDE
          T  +  S HV FDE
Subjt:  KKTLVIEESIHVVFDE

Arabidopsis top hitse value%identityAlignment
ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0940.79Show/hide
Query:  NRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKL
        NRT+ E  RSML E GLPK F A+A NTA ++ N+          P E+W   +P   Y + FGC  +I  ++ KL
Subjt:  NRTLQEFARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTTATTTGGCCCTTCTAGAATTGCTAGTTATGGAGGAAATTATTATGCTTTTGTGATAGTTGATGATTTTTCTAGATTTACTTGGGTTTTGATGATAAAACATAA
GGATGATGCTTTGAAAAGTTTTATTAGTTTTGCAAAAAGAGTACAAAATGAAAAAGGATTTTTTATTTCCAAAATTAGGAGTGATCACGGAGGAGAATTTGATAATGATG
CTTTTAAAGCTTTTTGTGAAGAAAATGGTTTTTCCCATAATTTTTCCTCTCCAAGAACTCCTCAACAAAATGGTGTAGTTGAAAGGAAAAATCGTACTTTGCAAGAATTT
GCTAGATCAATGTTGAATGAGTATGGTTTACCTAAATATTTTTGGGCGGAAGCCGTTAACACCGCTTGCTATGTTTCAAATAGAGTTTTAGTTAGACCCTCTTTAGATAA
AACTCCTTATGAACTTTGGCATGGAAAAATTCCAAATATTGGGTATTTCAAAGTTTTCGGTTGTAAATGTTTTATTTTGAATAACAAAGAAAAACTTGGAAAATTTGATT
CTAAGACGGATGTTGGTATTTTTCTAGGATATTCCTCTACTAGTAAAGCTTATAGAGTTTTCAATAAGAAAACTTTAGTTATTGAGGAATCTATTCATGTTGTATTTGAT
GAATCTTGGAATAATGTTTCTAATGAATCTATTTGTAGTGATGATTTAGAAAAAGATTTTGGAGATTTACTTGTTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACTTATTTGGCCCTTCTAGAATTGCTAGTTATGGAGGAAATTATTATGCTTTTGTGATAGTTGATGATTTTTCTAGATTTACTTGGGTTTTGATGATAAAACATAA
GGATGATGCTTTGAAAAGTTTTATTAGTTTTGCAAAAAGAGTACAAAATGAAAAAGGATTTTTTATTTCCAAAATTAGGAGTGATCACGGAGGAGAATTTGATAATGATG
CTTTTAAAGCTTTTTGTGAAGAAAATGGTTTTTCCCATAATTTTTCCTCTCCAAGAACTCCTCAACAAAATGGTGTAGTTGAAAGGAAAAATCGTACTTTGCAAGAATTT
GCTAGATCAATGTTGAATGAGTATGGTTTACCTAAATATTTTTGGGCGGAAGCCGTTAACACCGCTTGCTATGTTTCAAATAGAGTTTTAGTTAGACCCTCTTTAGATAA
AACTCCTTATGAACTTTGGCATGGAAAAATTCCAAATATTGGGTATTTCAAAGTTTTCGGTTGTAAATGTTTTATTTTGAATAACAAAGAAAAACTTGGAAAATTTGATT
CTAAGACGGATGTTGGTATTTTTCTAGGATATTCCTCTACTAGTAAAGCTTATAGAGTTTTCAATAAGAAAACTTTAGTTATTGAGGAATCTATTCATGTTGTATTTGAT
GAATCTTGGAATAATGTTTCTAATGAATCTATTTGTAGTGATGATTTAGAAAAAGATTTTGGAGATTTACTTGTTAATTAA
Protein sequenceShow/hide protein sequence
MDLFGPSRIASYGGNYYAFVIVDDFSRFTWVLMIKHKDDALKSFISFAKRVQNEKGFFISKIRSDHGGEFDNDAFKAFCEENGFSHNFSSPRTPQQNGVVERKNRTLQEF
ARSMLNEYGLPKYFWAEAVNTACYVSNRVLVRPSLDKTPYELWHGKIPNIGYFKVFGCKCFILNNKEKLGKFDSKTDVGIFLGYSSTSKAYRVFNKKTLVIEESIHVVFD
ESWNNVSNESICSDDLEKDFGDLLVN