CuGenDBv2

Gene ID	CSPI07G08810
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Chr7:6637949..6639009
RNA-Seq Expression	CSPI07G08810
Synteny	CSPI07G08810
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN75440.1 hypothetical protein VITISV_007304 [Vitis vinifera]

1.7e-131

71.19

Show/hide

Query:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ
        M EQGYRKTTSD+CVFVQKFSDDDFVILLLYVDDILIV RNV RIDNLKKQLSKSFAMKDLGP K+ LGIRI RD+AS+KL M QEQ+IEKV  RF MS+
Subjt:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ

Query:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG
         K VSS L                             +GSLMY MVCTR DIA+ VGVVSRF+SNP R HWEAVK IMRYLRGTS LKLTFG GK +L G
Subjt:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG

Query:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID
        YTDSDMA D+D+RKSTSGYLMTF+GGAVSWQSRLQKCVALSTTE EYI AVEACKE+LWMK F+QELGFKQQRYV+YC+NQSAIHL KN+++H+R+ +ID
Subjt:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID

Query:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK
        VRYH +RDALND LFE+EKIHTD+NGS MLTK  PR KL  C S  G+ +S+ +
Subjt:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK

RVW24009.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.5e-132

71.19

Show/hide

Query:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ
        M EQGYRKTTSD+CVFVQKFSDDDFVILLLYVDDILIVGRNV RIDNLKKQLSKSFAMKDLGP K+ LGIRI RD+AS+KL M QEQ+IEKVL RF M +
Subjt:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ

Query:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG
         K VSS L                             VGSLMY MVCTR DIA+ VGVVSRF+SNP R HWEAVK IMRYLRGTS LKLTFG GK +L G
Subjt:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG

Query:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID
        YTDSDMA D+D+R+STSGYLMTF+GGAVSWQSRLQKCVALSTTE EYI A EACKE+LWMK F+QELGFKQQRYV+YC+NQSAIHL KN+++H+R+ +ID
Subjt:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID

Query:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK
        VRYH +RDALND LFE+EKIHTD+NGS MLTK  PR KL  C S  G+ +S+ +
Subjt:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK

RVW24680.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

5.8e-132

71.19

Show/hide

Query:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ
        M EQGYRKTTSD+CVFVQKFSDDDFVILLLYVDDILIVGRNV RID+LKKQLSKSFAMKDLGP K+ LGIRI +D+AS+KL M QEQ+IEKVL RF MS+
Subjt:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ

Query:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG
         K VSS L                             VGSLMY MVCTR DIA+ VGVVSRF+SNP R HWEAVK IMRYLRGTS LKLTFG GK +L G
Subjt:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG

Query:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID
        YTDSDMA D+D+R+STSGYLMTF+GGAVSWQSRLQKCVALSTTE EYI A EACKE+LWMK F+QELGFKQQRYV+YC+NQSAIHL KN+++H+R+ +ID
Subjt:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID

Query:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK
        VRYH +RDALND LFE+EKIHTD+NGS MLTK  PR KL  C S  G+ +S+S+
Subjt:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK

RVW74036.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.7e-131

71.19

Show/hide

Query:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ
        M EQGYRKTTSD+CVFVQKFSDDDFVILLLYVDDILIV RNV RIDNLKKQLSKSFAMKDLGP K+ LGIRI RD+AS+KL M QEQ+IEKV  RF MS+
Subjt:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ

Query:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG
         K VSS L                             +GSLMY MVCTR DIA+ VGVVSRF+SNP R HWEAVK IMRYLRGTS LKLTFG GK +L G
Subjt:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG

Query:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID
        YTDSDMA D+D+RKSTSGYLMTF+GGAVSWQSRLQKCVALSTTE EYI AVEACKE+LWMK F+QELGFKQQRYV+YC+NQSAIHL KN+++H+R+ +ID
Subjt:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID

Query:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK
        VRYH +RDALND LFE+EKIHTD+NGS MLTK  PR KL  C S  G+ +S+ +
Subjt:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK

RVW85908.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.6e-132

71.19

Show/hide

Query:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ
        M EQGYRKTTSD+CVFVQKFSDDDFVILLLYVDDILIVGRNV RIDNLKKQLSKSFAMKDLGP K+ LGIRI RD+AS+KL M QEQ+IEKVL RF MS+
Subjt:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ

Query:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG
         K VSS L                             VGSLMYVMVCTR DIA+ VGVVSRF+SNP R HWEAVK IMRYLRGTS LKLTFG GK +L G
Subjt:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG

Query:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID
        YTDSDMA D+D+R+STSGYL TF+GGAVSWQSRLQKCV LSTTE EYI A EACKE+LWMK F+QELGFKQQRYV+YC+NQSAIHL KN+++H+R+ +ID
Subjt:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID

Query:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK
        VRYH +RDALND LFE+EKIHTD+NGS MLTK  PR KL  C S +G+ +S+ +
Subjt:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK

TrEMBL top hits

e value

%identity

Alignment

A0A438CLF9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.2e-132

71.19

Show/hide

Query:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ
        M EQGYRKTTSD+CVFVQKFSDDDFVILLLYVDDILIVGRNV RIDNLKKQLSKSFAMKDLGP K+ LGIRI RD+AS+KL M QEQ+IEKVL RF M +
Subjt:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ

Query:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG
         K VSS L                             VGSLMY MVCTR DIA+ VGVVSRF+SNP R HWEAVK IMRYLRGTS LKLTFG GK +L G
Subjt:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG

Query:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID
        YTDSDMA D+D+R+STSGYLMTF+GGAVSWQSRLQKCVALSTTE EYI A EACKE+LWMK F+QELGFKQQRYV+YC+NQSAIHL KN+++H+R+ +ID
Subjt:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID

Query:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK
        VRYH +RDALND LFE+EKIHTD+NGS MLTK  PR KL  C S  G+ +S+ +
Subjt:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK

A0A438CN91 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.8e-132

71.19

Show/hide

Query:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ
        M EQGYRKTTSD+CVFVQKFSDDDFVILLLYVDDILIVGRNV RID+LKKQLSKSFAMKDLGP K+ LGIRI +D+AS+KL M QEQ+IEKVL RF MS+
Subjt:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ

Query:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG
         K VSS L                             VGSLMY MVCTR DIA+ VGVVSRF+SNP R HWEAVK IMRYLRGTS LKLTFG GK +L G
Subjt:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG

Query:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID
        YTDSDMA D+D+R+STSGYLMTF+GGAVSWQSRLQKCVALSTTE EYI A EACKE+LWMK F+QELGFKQQRYV+YC+NQSAIHL KN+++H+R+ +ID
Subjt:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID

Query:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK
        VRYH +RDALND LFE+EKIHTD+NGS MLTK  PR KL  C S  G+ +S+S+
Subjt:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK

A0A438GP95 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.2e-132

71.19

Show/hide

Query:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ
        M EQGYRKTTSD+CVFVQKFSDDDFVILLLYVDDILIV RNV RIDNLKKQLSKSFAMKDLGP K+ LGIRI RD+AS+KL M QEQ+IEKV  RF MS+
Subjt:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ

Query:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG
         K VSS L                             +GSLMY MVCTR DIA+ VGVVSRF+SNP R HWEAVK IMRYLRGTS LKLTFG GK +L G
Subjt:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG

Query:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID
        YTDSDMA D+D+RKSTSGYLMTF+GGAVSWQSRLQKCVALSTTE EYI AVEACKE+LWMK F+QELGFKQQRYV+YC+NQSAIHL KN+++H+R+ +ID
Subjt:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID

Query:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK
        VRYH +RDALND LFE+EKIHTD+NGS MLTK  PR KL  C S  G+ +S+ +
Subjt:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK

A0A438HN89 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.3e-132

71.19

Show/hide

Query:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ
        M EQGYRKTTSD+CVFVQKFSDDDFVILLLYVDDILIVGRNV RIDNLKKQLSKSFAMKDLGP K+ LGIRI RD+AS+KL M QEQ+IEKVL RF MS+
Subjt:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ

Query:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG
         K VSS L                             VGSLMYVMVCTR DIA+ VGVVSRF+SNP R HWEAVK IMRYLRGTS LKLTFG GK +L G
Subjt:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG

Query:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID
        YTDSDMA D+D+R+STSGYL TF+GGAVSWQSRLQKCV LSTTE EYI A EACKE+LWMK F+QELGFKQQRYV+YC+NQSAIHL KN+++H+R+ +ID
Subjt:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID

Query:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK
        VRYH +RDALND LFE+EKIHTD+NGS MLTK  PR KL  C S +G+ +S+ +
Subjt:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK

A5C9D7 Integrase catalytic domain-containing protein

8.2e-132

71.19

Show/hide

Query:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ
        M EQGYRKTTSD+CVFVQKFSDDDFVILLLYVDDILIV RNV RIDNLKKQLSKSFAMKDLGP K+ LGIRI RD+AS+KL M QEQ+IEKV  RF MS+
Subjt:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ

Query:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG
         K VSS L                             +GSLMY MVCTR DIA+ VGVVSRF+SNP R HWEAVK IMRYLRGTS LKLTFG GK +L G
Subjt:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG

Query:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID
        YTDSDMA D+D+RKSTSGYLMTF+GGAVSWQSRLQKCVALSTTE EYI AVEACKE+LWMK F+QELGFKQQRYV+YC+NQSAIHL KN+++H+R+ +ID
Subjt:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID

Query:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK
        VRYH +RDALND LFE+EKIHTD+NGS MLTK  PR KL  C S  G+ +S+ +
Subjt:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

2.7e-47

32.56

Show/hide

Query:  MEEQGYRKTTSDYCVFV-QKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMS
        ++E  +  ++ D C+++  K + ++ + +LLYVDD++I   ++ R++N K+ L + F M DL   K  +GIRI  +   +K+Y+SQ  +++K+L +F M 
Subjt:  MEEQGYRKTTSDYCVFV-QKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMS

Query:  QEKSVSSLLP--------------------IVGSLMYVMVCTRHDIAHDVGVVSRFMS-NPRKHWEAVKCIMRYLRGTSSLKLTFGDG---KSVLAGYTD
           +VS+ LP                    ++G LMY+M+CTR D+   V ++SR+ S N  + W+ +K ++RYL+GT  +KL F      ++ + GY D
Subjt:  QEKSVSSLLP--------------------IVGSLMYVMVCTRHDIAHDVGVVSRFMS-NPRKHWEAVKCIMRYLRGTSSLKLTFGDG---KSVLAGYTD

Query:  SDMARDLDSRKSTSGYLM-TFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYV-IYCENQSAIHLGKNASFHSRTTYIDV
        SD A     RKST+GYL   F    + W ++ Q  VA S+TE EY+   EA +E LW+K  +  +  K +  + IY +NQ  I +  N S H R  +ID+
Subjt:  SDMARDLDSRKSTSGYLM-TFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYV-IYCENQSAIHLGKNASFHSRTTYIDV

Query:  RYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGI
        +YH  R+ + + +  LE I T++  + + TK  P ++       LG+
Subjt:  RYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGI

P0CV72 Secreted RxLR effector protein 161

2.0e-26

49.61

Show/hide

Query:  LPIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTF-GDGKSVLAGYTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSR
        L  VG++MY+MV TR D+A  VGV+S+F S+P   HW+A+K ++RYL+ T +  L F   G + L GY+D+D A D++SR+STSGYL    GG VSW+S+
Subjt:  LPIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTF-GDGKSVLAGYTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSR

Query:  LQKCVALSTTEVEYITAVEACKEMLWM
         Q+ VALS+TE EY+   EA +E +W+
Subjt:  LQKCVALSTTEVEYITAVEACKEMLWM

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.9e-101

55.17

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Query:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ
        M+ Q Y KT SD CV+ ++FS+++F+ILLLYVDD+LIVG++   I  LK  LSKSF MKDLGPA++ LG++IVR++ S KL++SQE++IE+VLERF M  
Subjt:  MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQ

Query:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG
         K VS+ L                             VGSLMY MVCTR DIAH VGVVSRF+ NP ++HWEAVK I+RYLRGT+   L FG    +L G
Subjt:  EKSVSSLL---------------------------PIVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAG

Query:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID
        YTD+DMA D+D+RKS++GYL TF+GGA+SWQS+LQKCVALSTTE EYI A E  KEM+W+KRF+QELG  Q+ YV+YC++QSAI L KN+ +H+RT +ID
Subjt:  YTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYID

Query:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGI
        VRYH +R+ ++DE  ++ KI T+ N + MLTK  PR+K E C   +G+
Subjt:  VRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.8e-35

32.84

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Query:  GYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQEKSV
        G+  + SD  +FV +      V +L+YVDDILI G +   + N    LS+ F++KD       LGI   R      L++SQ ++I  +L R  M   K V
Subjt:  GYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQEKSV

Query:  SSLLP---------------------IVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSV-LAGYTDSDMARD
        ++ +                      IVGSL Y +  TR DI++ V  +S+FM  P  +H +A+K I+RYL GT +  +    G ++ L  Y+D+D A D
Subjt:  SSLLP---------------------IVGSLMYVMVCTRHDIAHDVGVVSRFMSNP-RKHWEAVKCIMRYLRGTSSLKLTFGDGKSV-LAGYTDSDMARD

Query:  LDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQR-YVIYCENQSAIHLGKNASFHSRTTYIDVRYHLLRD
         D   ST+GY++      +SW S+ QK V  S+TE EY +      EM W+   + ELG +  R  VIYC+N  A +L  N  FHSR  +I + YH +R+
Subjt:  LDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQR-YVIYCENQSAIHLGKNASFHSRTTYIDVRYHLLRD

Query:  ALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGIT
         +      +  + T    +  LTK   R+  +   S +G+T
Subjt:  ALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGIT

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

4.2e-32

31.53

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Query:  GYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQEKSV
        G+  + SD  +FV +      + +L+YVDDILI G + + + +    LS+ F++K+       LGI   R    + L++SQ ++   +L R  M   K V
Subjt:  GYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQEKSV

Query:  S--------------SLLP-------IVGSLMYVMVCTRHDIAHDVGVVSRFMSNPR-KHWEAVKCIMRYLRGTSSLKLTFGDGKSV-LAGYTDSDMARD
        +              + LP       IVGSL Y +  TR D+++ V  +S++M  P   HW A+K ++RYL GT    +    G ++ L  Y+D+D A D
Subjt:  S--------------SLLP-------IVGSLMYVMVCTRHDIAHDVGVVSRFMSNPR-KHWEAVKCIMRYLRGTSSLKLTFGDGKSV-LAGYTDSDMARD

Query:  LDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFK-QQRYVIYCENQSAIHLGKNASFHSRTTYIDVRYHLLRD
         D   ST+GY++      +SW S+ QK V  S+TE EY +      E+ W+   + ELG +     VIYC+N  A +L  N  FHSR  +I + YH +R+
Subjt:  LDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFK-QQRYVIYCENQSAIHLGKNASFHSRTTYIDVRYHLLRD

Query:  ALNDELFELEKIHTDHNGSKMLTKNQPRSKLEF
         +      +  + T    +  LTK  P S++ F
Subjt:  ALNDELFELEKIHTDHNGSKMLTKNQPRSKLEF

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.5e-32

31.33

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Query:  GYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLER--------F
        G+ ++ SD+  F+ K +   F+ +L+YVDDI+I   N   +D LK QL   F ++DLGP K  LG+ I R  A   + + Q ++   +L+          
Subjt:  GYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLER--------F

Query:  KMSQEKSVS-------------SLLPIVGSLMYVMVCTRHDIAHDVGVVSRFMSNPR-KHWEAVKCIMRYLRGTSSLKLTF-GDGKSVLAGYTDSDMARD
         +  + SV+             +   ++G LMY+ + TR DI+  V  +S+F   PR  H +AV  I+ Y++GT    L +    +  L  ++D+     
Subjt:  KMSQEKSVS-------------SLLPIVGSLMYVMVCTRHDIAHDVGVVSRFMSNPR-KHWEAVKCIMRYLRGTSSLKLTF-GDGKSVLAGYTDSDMARD

Query:  LDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQR-YVIYCENQSAIHLGKNASFHSRTTYIDVRYHLLRD
         D+R+ST+GY M      +SW+S+ Q+ V+ S+ E EY     A  EM+W+ +F +EL     +  +++C+N +AIH+  NA FH RT +I+   H +R+
Subjt:  LDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYITAVEACKEMLWMKRFVQELGFKQQR-YVIYCENQSAIHLGKNASFHSRTTYIDVRYHLLRD

ATMG00810.1 DNA/RNA polymerases superfamily protein

4.4e-21

32.74

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Query:  LLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQEKSVSSLLP------------------
        LLLYVDDIL+ G +   ++ L  QLS +F+MKDLGP    LGI+I    +   L++SQ ++ E++L    M   K +S+ LP                  
Subjt:  LLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQEKSVSSLLP------------------

Query:  --IVGSLMYVMVCTRHDIAHDVGVVSRFMSNPR-KHWEAVKCIMRYLRGTSSLKL-TFGDGKSVLAGYTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSR
          IVG+L Y +  TR DI++ V +V + M  P    ++ +K ++RY++GT    L    + K  +  + DSD A    +R+ST+G+        +SW ++
Subjt:  --IVGSLMYVMVCTRHDIAHDVGVVSRFMSNPR-KHWEAVKCIMRYLRGTSSLKL-TFGDGKSVLAGYTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSR

Query:  LQKCVALSTTEVEYITAVEACKEMLW
         Q  V+ S+TE EY        E+ W
Subjt:  LQKCVALSTTEVEYITAVEACKEMLW

Sequences

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CDS sequence

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ATGGAGGAGCAAGGCTACAGAAAAACTACTTCTGATTACTGTGTTTTTGTCCAGAAATTTTCTGATGATGATTTTGTTATATTATTATTATATGTTGATGATATTTTGAT
TGTTGGCAGGAATGTTTTGAGAATTGATAACTTGAAGAAACAATTGAGCAAATCCTTTGCCATGAAGGATTTGGGGCCAGCAAAGAAAGGTCTTGGAATTCGAATAGTTC
GAGATAAAGCATCCGAGAAGTTATACATGTCACAGGAGCAACACATAGAGAAAGTACTTGAACGTTTCAAGATGAGTCAAGAAAAATCAGTTAGTTCCCTTTTACCCATA
GTTGGAAGTCTAATGTATGTCATGGTATGTACTAGACATGATATTGCTCATGATGTTGGTGTTGTTAGTCGTTTTATGTCTAATCCAAGAAAACATTGGGAGGCAGTCAA
GTGCATCATGAGATATTTGAGAGGTACTTCCAGTTTGAAGCTCACATTTGGGGATGGAAAGTCAGTACTTGCTGGGTATACTGATTCAGATATGGCAAGGGACTTAGACA
GCAGAAAGTCTACTTCTGGTTACTTGATGACATTTGCAGGTGGTGCAGTGTCTTGGCAGTCAAGGTTGCAGAAATGTGTTGCCCTTTCTACAACTGAAGTAGAGTATATT
ACAGCAGTAGAAGCATGTAAAGAGATGTTGTGGATGAAGCGCTTTGTACAAGAGCTTGGCTTCAAGCAACAACGATATGTGATATATTGTGAGAATCAGAGTGCTATTCA
CCTTGGTAAGAATGCTTCATTTCATTCCAGAACAACATATATTGATGTGAGATATCACTTGCTTAGAGATGCTTTAAATGATGAATTGTTTGAACTTGAGAAGATACACA
CTGATCATAATGGATCTAAAATGTTGACAAAGAATCAACCAAGATCGAAGCTTGAGTTTTGTCATTCCACACTAGGAATAACAAATTCATCCTCAAAGTGA

mRNA sequence

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Protein sequence

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MEEQGYRKTTSDYCVFVQKFSDDDFVILLLYVDDILIVGRNVLRIDNLKKQLSKSFAMKDLGPAKKGLGIRIVRDKASEKLYMSQEQHIEKVLERFKMSQEKSVSSLLPI
VGSLMYVMVCTRHDIAHDVGVVSRFMSNPRKHWEAVKCIMRYLRGTSSLKLTFGDGKSVLAGYTDSDMARDLDSRKSTSGYLMTFAGGAVSWQSRLQKCVALSTTEVEYI
TAVEACKEMLWMKRFVQELGFKQQRYVIYCENQSAIHLGKNASFHSRTTYIDVRYHLLRDALNDELFELEKIHTDHNGSKMLTKNQPRSKLEFCHSTLGITNSSSK

CSPI07G08810 (gene) of Cucumber (PI 183967) v1 genome