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CSPI07G08860 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G08860
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein RADIALIS-like 1
Genome locationChr7:6694371..6696141
RNA-Seq ExpressionCSPI07G08860
SyntenyCSPI07G08860
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645640.1 hypothetical protein Csa_020521 [Cucumis sativus]2.7e-3083.95Show/hide
Query:  MASMSAHG-SSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSS
        MASM+AHG S+ WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEEEVK HYQLL+EDV HIESG+IPFPYR+STRSS
Subjt:  MASMSAHG-SSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSS

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]3.6e-3086.84Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKS
        MASMSAHGS  WTA +NKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVKRHYQLLLEDV HIESG++PFPYR S
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKS

XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]2.2e-3593.83Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSSR
        MASMSAHGS+ WTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEE+VKRHYQLLLEDVNHIE+GQIPFPYR STRSSR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSSR

XP_022952660.1 protein RADIALIS-like 1 [Cucurbita moschata]3.6e-3084.62Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTR
        MASMSAHGSSAWTA ENKAFEKALA++D+DTPERW+NVAKAIGGKTE+EVKRHYQLL++DV HIESG+I FPYR STR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTR

XP_022972544.1 protein RADIALIS-like 1 [Cucurbita maxima]1.0e-2983.33Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTR
        MASMSAHGSSAWTA ENKAFEKALA++D+DTP+RW+NVAKAIGGKTE+EVKRHYQLL+ DV HIESG+I FPYR STR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTR

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein6.6e-38100Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSSR
        MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSSR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSSR

A0A1S3BGF0 protein RADIALIS-like 11.0e-3593.83Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSSR
        MASMSAHGS+ WTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEE+VKRHYQLLLEDVNHIE+GQIPFPYR STRSSR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSSR

A0A1S3BGF6 protein RADIALIS-like 11.7e-3086.84Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKS
        MASMSAHGS  WTA +NKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVKRHYQLLLEDV HIESG++PFPYR S
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKS

A0A6J1GKV1 protein RADIALIS-like 11.7e-3084.62Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTR
        MASMSAHGSSAWTA ENKAFEKALA++D+DTPERW+NVAKAIGGKTE+EVKRHYQLL++DV HIESG+I FPYR STR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTR

A0A6J1I8Y0 protein RADIALIS-like 15.0e-3083.33Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTR
        MASMSAHGSSAWTA ENKAFEKALA++D+DTP+RW+NVAKAIGGKTE+EVKRHYQLL+ DV HIESG+I FPYR STR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.5e-2365.79Show/hide
Query:  ASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFP-YRKS
        +SMS+  S +WTA +NKAFE+ALA YD+DTP RW NVAK +GGKT EEVKRHY+LL++D+N IE+G +PFP YR S
Subjt:  ASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFP-YRKS

Q1A173 Protein RADIALIS-like 68.3e-2260Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSS
        MAS S    S WT  +NK FE+ALA+YDKDTP+RW NVAKA+GGKT EEVKRHY +L+ED+ +IE+G++P P  K+  S+
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSS

Q58FS3 Transcription factor RADIALIS1.1e-2159.74Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKST
        MAS    G   W+A ENKAFE+ALA+YDKDTP+RW NVA+A+ G+T EEVK+HY++L+ED+ +IESG++PFP  ++T
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKST

Q6NNN0 Protein RADIALIS-like 33.2e-2161.84Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKS
        MAS S   S++WT  ENK FE+ALA YD+DTP+RW NVA+A+GGK+ EEV+RHY+LL+ DVN IESG+ P P  +S
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKS

Q9SIJ5 Protein RADIALIS-like 21.3e-2261.33Show/hide
Query:  SMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKST
        SMS++GS +WT  +NKAFE+ALA+YD+DTP+RW NVA+A+GGKT EE KR Y LL+ D+  IE+G +PFP  K+T
Subjt:  SMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKST

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-2159.21Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKS
        MAS S   SS+WT+ +NK FE+ALA+YDKDTP+RW NVAKA+G K+ EEVKRHY +L+ED+ +IE   +P P  K+
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKS

AT1G75250.1 RAD-like 65.9e-2360Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSS
        MAS S    S WT  +NK FE+ALA+YDKDTP+RW NVAKA+GGKT EEVKRHY +L+ED+ +IE+G++P P  K+  S+
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSS

AT1G75250.2 RAD-like 65.9e-2360Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSS
        MAS S    S WT  +NK FE+ALA+YDKDTP+RW NVAKA+GGKT EEVKRHY +L+ED+ +IE+G++P P  K+  S+
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSS

AT2G21650.1 Homeodomain-like superfamily protein9.1e-2461.33Show/hide
Query:  SMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKST
        SMS++GS +WT  +NKAFE+ALA+YD+DTP+RW NVA+A+GGKT EE KR Y LL+ D+  IE+G +PFP  K+T
Subjt:  SMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKST

AT4G39250.1 RAD-like 11.1e-2465.79Show/hide
Query:  ASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFP-YRKS
        +SMS+  S +WTA +NKAFE+ALA YD+DTP RW NVAK +GGKT EEVKRHY+LL++D+N IE+G +PFP YR S
Subjt:  ASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFP-YRKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTGCTCATGGGTCAAGTGCATGGACTGCAATTGAAAACAAAGCCTTTGAGAAAGCTTTGGCAATTTATGACAAAGATACACCTGAGAGATGGCTGAA
TGTTGCAAAGGCCATTGGTGGAAAAACTGAAGAAGAAGTCAAGAGGCATTATCAACTTCTTCTTGAGGATGTTAACCATATTGAGTCTGGTCAAATTCCTTTTCCCTATC
GAAAATCTACAAGATCGAGTCGCTGA
mRNA sequenceShow/hide mRNA sequence
AAACCCTTCAAGCCTTACTCCTTATAAATACCACACTCACCCTTTGTGTTCTTCGCCACATATATCCATATTCTTTTTAAGTTCTTTTTTTCCCTTTGTTTTGCCAAAAC
ATAGCATTAACCAAATGGCTTCAATGTCTGCTCATGGGTCAAGTGCATGGACTGCAATTGAAAACAAAGCCTTTGAGAAAGCTTTGGCAATTTATGACAAAGATACACCT
GAGAGATGGCTGAATGTTGCAAAGGCCATTGGTGGAAAAACTGAAGAAGAAGTCAAGAGGCATTATCAACTTCTTCTTGAGGATGTTAACCATATTGAGTCTGGTCAAAT
TCCTTTTCCCTATCGAAAATCTACAAGATCGAGTCGCTGAATGATACGAAACGAGGATGGGAGAAACACATGAATAGATAAAATGAGACAGCTCATCAGAGTATGGAAGA
ATAAAGGAAGAGGAAGAACCATTTACTCTCTATTCTACTTGTAATGCCCCTTTAATCTAACTGTAAAGTATCAATATTGAGAGTAATAAATTTTGGAGTTTTTTTTTTTG
GGTAAAAATACAACTCATCTTTAATTGTCTTTAACCTTATACGTGTTCACACA
Protein sequenceShow/hide protein sequence
MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIESGQIPFPYRKSTRSSR