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CSPI07G08880 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G08880
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProtein RADIALIS-like 1
Genome locationChr7:6710811..6712068
RNA-Seq ExpressionCSPI07G08880
SyntenyCSPI07G08880
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036170.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]3.3e-3696.2Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN
        MAS+SAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYR+SR N
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN

KAG6588435.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2982.89Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSS
        MAS+S+HGS  WTAKQNKAFEEALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+EDVK IESG+VP+PYR+S
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSS

XP_004151116.1 protein RADIALIS-like 1 [Cucumis sativus]2.9e-37100Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN
        MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]9.5e-3694.94Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN
        MAS+SAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYR+SR N
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN

XP_022952073.1 protein RADIALIS-like 1 [Cucurbita moschata]4.0e-3491.14Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN
        MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYRSSR +
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN

TrEMBL top hitse value%identityAlignment
A0A0A0K344 SANT domain-containing protein1.4e-37100Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN
        MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN

A0A1S3BGF6 protein RADIALIS-like 14.6e-3694.94Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN
        MAS+SAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYR+SR N
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN

A0A5A7SYM4 Protein RADIALIS-like 11.6e-3696.2Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN
        MAS+SAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYR+SR N
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN

A0A6J1GJG0 protein RADIALIS-like 11.9e-3491.14Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN
        MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYRSSR +
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN

A0A6J1IA78 protein RADIALIS-like 11.9e-3491.14Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN
        MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYRSSR +
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 17.8e-2568.42Show/hide
Query:  ASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSS
        +S+S+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+  IE+G VPFP YR+S
Subjt:  ASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSS

Q1A173 Protein RADIALIS-like 62.8e-2263.75Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN
        MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED+ +IE+G+VP P Y++  SN
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN

Q58FS3 Transcription factor RADIALIS2.3e-2467.53Show/hide
Query:  SAHGSG-VWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN
        S  GSG  W+AK+NKAFE ALA+YDKDTPDRW NVA+A+ G+T EEVK+HY++L+ED+K+IESGKVPFP YR++  N
Subjt:  SAHGSG-VWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN

Q6NNN0 Protein RADIALIS-like 33.6e-2262.5Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN
        MAS S   S  WT K+NK FE ALA YD+DTPDRW NVA+A+GGK+ EEV+RHY+LL+ DV  IESG+ P P YRS+ +N
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN

Q9SIJ5 Protein RADIALIS-like 25.1e-2464.1Show/hide
Query:  SLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN
        S+S++GSG WT KQNKAFE ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++ IE+G VPFP Y+++  N
Subjt:  SLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.9e-2265.28Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP
        MAS S   S  WT+KQNK FE ALA+YDKDTPDRW NVAKA+G K+ EEVKRHY +L+ED+ +IE   VP P
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP

AT1G75250.1 RAD-like 62.0e-2363.75Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN
        MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED+ +IE+G+VP P Y++  SN
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN

AT1G75250.2 RAD-like 62.0e-2363.75Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN
        MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED+ +IE+G+VP P Y++  SN
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN

AT2G21650.1 Homeodomain-like superfamily protein3.6e-2564.1Show/hide
Query:  SLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN
        S+S++GSG WT KQNKAFE ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++ IE+G VPFP Y+++  N
Subjt:  SLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRSN

AT4G39250.1 RAD-like 15.6e-2668.42Show/hide
Query:  ASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSS
        +S+S+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+  IE+G VPFP YR+S
Subjt:  ASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCATTGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAAGAAGCTTTGGCAATGTATGATAAAGACACACCTGATAGATGGTTGAA
TGTTGCAAAAGCCATTGGTGGGAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTCTGGAGGATGTTAAGCATATTGAGTCGGGCAAAGTTCCTTTTCCTTACA
GAAGCTCAAGAAGCAATTAA
mRNA sequenceShow/hide mRNA sequence
GATCCTTTTTCCTTAGAACAGAAATATTGAATTCTTTTTATTCTAACCCATTTTTTTTCTCTAGTTTTGCTCTCTCCATTATTTGAAACCCAATTAAAGTTAGAAATATA
CATTCAAGAAATTAAACTATGGCCTCATTGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAAGAAGCTTTGGCAATGTATGATAAAGACAC
ACCTGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGGAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTCTGGAGGATGTTAAGCATATTGAGTCGGGCA
AAGTTCCTTTTCCTTACAGAAGCTCAAGAAGCAATTAATTGCTACTAACATATGATCAAAAGATGGAGGATGAGAAAGATGAAGTTGAATGAAGCCAGGTGCAGTACTGG
AAGAATAAAAAGGAAAGAGCCATTTTCTTGCTGTTGCACCATTTTCTTCTTTTCTAACAAAACAGCAATATATATATATATATATTTGAAGTTCCTTATTGTATCTTTTC
AAATCCAATTGTAATGGTCAAATGAATAAGCTTTTATGAATTAAACCATCAATATAATGATTTATATTGAGATTGAAGAGGCC
Protein sequenceShow/hide protein sequence
MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN