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CSPI07G08900 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G08900
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProtein RADIALIS-like 1
Genome locationChr7:6717808..6718872
RNA-Seq ExpressionCSPI07G08900
SyntenyCSPI07G08900
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036165.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.6e-3393.59Show/hide
Query:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRST
        MASMTAHGPST WT  QNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVK HYQLLVEDVKHIESGEIPFPYRR T
Subjt:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRST

KAE8645640.1 hypothetical protein Csa_020521 [Cucumis sativus]3.3e-39100Show/hide
Query:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSSH
        MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSSH
Subjt:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSSH

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]5.8e-2883.12Show/hide
Query:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRS
        MASM+AHG S  WT  QNKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVK HYQLL+EDVKHIESG++PFPYR S
Subjt:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRS

XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]1.1e-2982.72Show/hide
Query:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSS
        MASM+AHG ST WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VK HYQLL+EDV HIE+G+IPFPYR STRSS
Subjt:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSS

XP_022952074.1 protein RADIALIS-like 1 [Cucurbita moschata]3.4e-2881.82Show/hide
Query:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRS
        MASM+AHG + +WT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HYQLL++DVK IESGE+PFPY RS
Subjt:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRS

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein1.3e-3083.95Show/hide
Query:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSS
        MASM+AHG S+ WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEEEVK HYQLL+EDV HIESG+IPFPYR+STRSS
Subjt:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSS

A0A0A0K3K5 SANT domain-containing protein4.6e-3194.52Show/hide
Query:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFP
        MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESG +  P
Subjt:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFP

A0A1S3BGF0 protein RADIALIS-like 15.1e-3082.72Show/hide
Query:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSS
        MASM+AHG ST WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VK HYQLL+EDV HIE+G+IPFPYR STRSS
Subjt:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSS

A0A5A7T3V4 Protein RADIALIS-like 17.6e-3493.59Show/hide
Query:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRST
        MASMTAHGPST WT  QNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVK HYQLLVEDVKHIESGEIPFPYRR T
Subjt:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRST

A0A6J1GKK4 protein RADIALIS-like 11.6e-2881.82Show/hide
Query:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRS
        MASM+AHG + +WT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HYQLL++DVK IESGE+PFPY RS
Subjt:  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRS

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.4e-2162.03Show/hide
Query:  MASMTAHGPST-TWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFP-YRRS
        MAS +    S+ +WT  QNKAFE+ALA YD+DTP RW NVAK +GGKT EEVK HY+LLV+D+  IE+G +PFP YR S
Subjt:  MASMTAHGPST-TWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFP-YRRS

Q1A173 Protein RADIALIS-like 61.2e-2063.77Show/hide
Query:  WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSS
        WT +QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK HY +LVED+ +IE+G +P P  ++  S+
Subjt:  WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSS

Q58FS3 Transcription factor RADIALIS1.3e-2260.81Show/hide
Query:  TAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRST
        +  G    W+  +NKAFE+ALAVYDKDTP+RW NVA+A+ G+T EEVK HY++LVED+K+IESG++PFP  R+T
Subjt:  TAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRST

Q6NNN0 Protein RADIALIS-like 31.8e-1957.53Show/hide
Query:  STTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSSH
        S +WT  +NK FE+ALA YD+DTP+RW NVA+A+GGK+ EEV+ HY+LL+ DV  IESG  P P  RS  ++H
Subjt:  STTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSSH

Q9SIJ5 Protein RADIALIS-like 21.4e-2159.26Show/hide
Query:  SMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFP-YRRSTRSSH
        SM+++G S +WT+ QNKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE K  Y LLV D++ IE+G +PFP Y+ +T +S+
Subjt:  SMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFP-YRRSTRSSH

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-1964.06Show/hide
Query:  STTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFP
        S++WT  QNK FE+ALAVYDKDTP+RW NVAKA+G K+ EEVK HY +LVED+ +IE   +P P
Subjt:  STTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFP

AT1G75250.1 RAD-like 68.6e-2263.77Show/hide
Query:  WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSS
        WT +QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK HY +LVED+ +IE+G +P P  ++  S+
Subjt:  WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSS

AT1G75250.2 RAD-like 68.6e-2263.77Show/hide
Query:  WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSS
        WT +QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK HY +LVED+ +IE+G +P P  ++  S+
Subjt:  WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSS

AT2G21650.1 Homeodomain-like superfamily protein1.0e-2259.26Show/hide
Query:  SMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFP-YRRSTRSSH
        SM+++G S +WT+ QNKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE K  Y LLV D++ IE+G +PFP Y+ +T +S+
Subjt:  SMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFP-YRRSTRSSH

AT4G39250.1 RAD-like 13.9e-2262.03Show/hide
Query:  MASMTAHGPST-TWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFP-YRRS
        MAS +    S+ +WT  QNKAFE+ALA YD+DTP RW NVAK +GGKT EEVK HY+LLV+D+  IE+G +PFP YR S
Subjt:  MASMTAHGPST-TWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFP-YRRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATGACTGCTCATGGACCAAGCACTACATGGACTATAAACCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAGAGATGGCT
GAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGCCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTGAAATTCCTTTTCCTT
ATCGAAGATCTACGCGATCAAGTCATTAA
mRNA sequenceShow/hide mRNA sequence
TTCACCTTTCAAAATAATACTTCTTTTTTAGTCCTTTCTTTTTTCTCTAACCCTTTAATTATCATTACCTTTTATTTTCCCTTCACTTCAAACCCTTTTAAGGCTTCCTT
TTTATTTTGTCAATGGCTTCCATGACTGCTCATGGACCAAGCACTACATGGACTATAAACCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACC
TGAGAGATGGCTGAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGCCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTGAAA
TTCCTTTTCCTTATCGAAGATCTACGCGATCAAGTCATTAAGCATTGATGGAACAAGGAAGATTGATTGAGCCAGCTCCTTCAGTGTTTGAAGAATAGAAGAAGCAAAAA
GCATATTATGTTTGTCTTTTTGTGCCAATTTAAAGTGTAACTGTAATTTTTTTTGAATGGAATAAATGATTATTTGC
Protein sequenceShow/hide protein sequence
MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSSH