CuGenDBv2

Gene ID	CSPI07G08970
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	Chr7:6802091..6807919
RNA-Seq Expression	CSPI07G08970
Synteny	CSPI07G08970
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0042254 - ribosome biogenesis (biological process) GO:0046907 - intracellular transport (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR000953 - Chromo/chromo shadow domain IPR016197 - Chromo-like domain superfamily IPR023780 - Chromo domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039185.1 IST1-like protein [Cucumis melo var. makuwa]

1.7e-60

48.29

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Query:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH
        +K + D KR DVEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VAYKLELPAS+SIHPVFHVSQLKK+ G+HQ V+   LPYVTE H
Subjt:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH

Query:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQHSLEAKRKAVTRPGICKASIPGNSSNFNPPTLFLTQAHRQISLRQKKNEKLSPKFFG
        +W+ IPEEI G+ KNK    +VL+KW+GLP  E TWEDYD++Q                                   Q + ++ L  K N +       
Subjt:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQHSLEAKRKAVTRPGICKASIPGNSSNFNPPTLFLTQAHRQISLRQKKNEKLSPKFFG

Query:  PYTIVERIILVAYKLELPASASIHPVFHVSQLNKMVGDHQLVQTDMLPYVTETHEWKSIPEEI
                  +AY L+ P  A+IHPVFHVSQL + +    LV++ +LP  T+  +WK++PEE+
Subjt:  PYTIVERIILVAYKLELPASASIHPVFHVSQLNKMVGDHQLVQTDMLPYVTETHEWKSIPEEI

KAA0052896.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.9e-48

67.13

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Query:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH
        MK +   KR DVEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VAYKLELPAS+SIHPVFHVSQLKK+ G+HQ V+    PYVTE H
Subjt:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH

Query:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQ
        +W+ IPEEI G+ KNK    +VL+KW+GL   E TWEDYD++Q
Subjt:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQ

KAA0066054.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.8e-46

64.29

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Query:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH
        MK + D K+ +VEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VA+KLE P S SIHP+F V QLKKM G+HQ+ +   LPY+TE H
Subjt:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH

Query:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYD
        KW++IPEEI+G+ KNK    +VL+KW+GL  +EATWEDYD
Subjt:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYD

TYJ99843.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.8e-46

64.29

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Query:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH
        MK + D K+ +VEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VA+KLE P S SIHP+F V QLKKM G+HQ+ +   LPY+TE H
Subjt:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH

Query:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYD
        KW++IPEEI+G+ KNK    +VL+KW+GL  +EATWEDYD
Subjt:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYD

TYK14463.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.9e-48

67.13

Show/hide

Query:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH
        MK +   KR DVEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VAYKLELPAS+SIHPVFHVSQLKK+ G+HQ V+    PYVTE H
Subjt:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH

Query:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQ
        +W+ IPEEI G+ KNK    +VL+KW+GL   E TWEDYD++Q
Subjt:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UFA3 Ty3/gypsy retrotransposon protein

9.2e-49

67.13

Show/hide

Query:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH
        MK +   KR DVEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VAYKLELPAS+SIHPVFHVSQLKK+ G+HQ V+    PYVTE H
Subjt:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH

Query:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQ
        +W+ IPEEI G+ KNK    +VL+KW+GL   E TWEDYD++Q
Subjt:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQ

A0A5A7VFH2 Ty3-gypsy retrotransposon protein

8.6e-47

64.29

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Query:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH
        MK + D K+ +VEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VA+KLE P S SIHP+F V QLKKM G+HQ+ +   LPY+TE H
Subjt:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH

Query:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYD
        KW++IPEEI+G+ KNK    +VL+KW+GL  +EATWEDYD
Subjt:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYD

A0A5D3BKM7 Ty3-gypsy retrotransposon protein

8.6e-47

64.29

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Query:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH
        MK + D K+ +VEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VA+KLE P S SIHP+F V QLKKM G+HQ+ +   LPY+TE H
Subjt:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH

Query:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYD
        KW++IPEEI+G+ KNK    +VL+KW+GL  +EATWEDYD
Subjt:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYD

A0A5D3CRH2 Ty3/gypsy retrotransposon protein

9.2e-49

67.13

Show/hide

Query:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH
        MK +   KR DVEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VAYKLELPAS+SIHPVFHVSQLKK+ G+HQ V+    PYVTE H
Subjt:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH

Query:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQ
        +W+ IPEEI G+ KNK    +VL+KW+GL   E TWEDYD++Q
Subjt:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQ

A0A5D3D4I0 IST1-like protein

8.0e-61

48.29

Show/hide

Query:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH
        +K + D KR DVEY VGDMVFLKIRPYRQ+SLR+++NEKL+PKFFGPY I+E+I  VAYKLELPAS+SIHPVFHVSQLKK+ G+HQ V+   LPYVTE H
Subjt:  MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETH

Query:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQHSLEAKRKAVTRPGICKASIPGNSSNFNPPTLFLTQAHRQISLRQKKNEKLSPKFFG
        +W+ IPEEI G+ KNK    +VL+KW+GLP  E TWEDYD++Q                                   Q + ++ L  K N +       
Subjt:  KWKSIPEEIFGHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQHSLEAKRKAVTRPGICKASIPGNSSNFNPPTLFLTQAHRQISLRQKKNEKLSPKFFG

Query:  PYTIVERIILVAYKLELPASASIHPVFHVSQLNKMVGDHQLVQTDMLPYVTETHEWKSIPEEI
                  +AY L+ P  A+IHPVFHVSQL + +    LV++ +LP  T+  +WK++PEE+
Subjt:  PYTIVERIILVAYKLELPASASIHPVFHVSQLNKMVGDHQLVQTDMLPYVTETHEWKSIPEEI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAAAATAACGTAGACTTGAAGCGTCATGATGTGGAGTATGCAGTTGGCGATATGGTCTTCCTGAAGATTAGGCCCTATAGACAGATCTCATTACGACAAAAGAAAAA
TGAGAAACTATCCCCCAAGTTCTTTGGGCCTTATACGATTGTGGAACGCATCATACTGGTTGCGTATAAGCTAGAGTTGCCAGCATCCGCTTCCATCCATCCAGTGTTTC
ATGTGTCCCAACTCAAAAAAATGGTTGGTGATCATCAACTTGTACAGACAGACATGCTGCCTTACGTTACTGAAACTCACAAGTGGAAATCTATACCGGAGGAAATATTT
GGGCACTCGAAGAATAAAAGAGGGAGCTGTGAGGTTTTGATTAAATGGCAAGGTCTCCCTCCTCATGAGGCAACGTGGGAAGATTATGACAAGCTCCAGCACAGCCTAGA
AGCAAAAAGAAAGGCTGTAACCAGACCTGGAATTTGTAAAGCATCCATCCCAGGTAATTCTTCCAATTTCAATCCTCCAACCCTCTTCCTAACACAAGCCCATAGACAGA
TCTCATTACGACAAAAGAAAAATGAGAAACTATCCCCCAAGTTCTTTGGGCCTTATACGATTGTGGAACGCATCATACTGGTTGCGTATAAGCTAGAGTTGCCAGCATCC
GCTTCCATCCATCCAGTGTTTCATGTGTCCCAACTCAACAAAATGGTTGGTGATCATCAACTTGTACAGACAGACATGCTGCCTTACGTTACTGAAACTCACGAGTGGAA
ATCTATACCGGAGGAAATATTTGGGTACTCGAAGAATAAAAGAGGAAGCTGTGAGGTTTTGATTAAATGGCAAGGTCTCCCTCCTCATGAGGCAACGTGGGAAGATTATG
ACAAGCTCCAGTACAGCCTAGAAGCAAAAAGAAAGGCGTTAAACATAACACAGCTATTTAAACGATTACGACGACAATATTGGAATTACAACGATGATTTCTCATCCCAA
ACGACAAGGAGAGCGATTTGGTATTCAAGGACGATGACGTCGAAACCCGCTCCCCAACTTGATTTTGTTTTTATGGCAATAACCCCCTTCTTGGTTTTCTTTTCTTGCAG
ACGACCACATCGGCAAACCCCATCTGTTTTCTTGCGGACGACCACACCGATAGATTTGTGTAAGATGAAGCGAAGTACCGAACAATGTAAGGCCATGATCGCTCAATCAG
GCAATTCTACATTTTGTGCCTATGATTCTGATATTGCAATTGCATTAGAATGTATAATAAACTTATATCAAGTAGCACTGCTGGAGGAGGGCGTTACACATCTAAAACGT
CCTACGTTACCTTCTAAGGCTGAAACTTTAATTAAGTAA

mRNA sequence

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Protein sequence

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MKNNVDLKRHDVEYAVGDMVFLKIRPYRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPASASIHPVFHVSQLKKMVGDHQLVQTDMLPYVTETHKWKSIPEEIF
GHSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQHSLEAKRKAVTRPGICKASIPGNSSNFNPPTLFLTQAHRQISLRQKKNEKLSPKFFGPYTIVERIILVAYKLELPAS
ASIHPVFHVSQLNKMVGDHQLVQTDMLPYVTETHEWKSIPEEIFGYSKNKRGSCEVLIKWQGLPPHEATWEDYDKLQYSLEAKRKALNITQLFKRLRRQYWNYNDDFSSQ
TTRRAIWYSRTMTSKPAPQLDFVFMAITPFLVFFSCRRPHRQTPSVFLRTTTPIDLCKMKRSTEQCKAMIAQSGNSTFCAYDSDIAIALECIINLYQVALLEEGVTHLKR
PTLPSKAETLIK

CSPI07G08970 (gene) of Cucumber (PI 183967) v1 genome