CuGenDBv2

Gene ID	CSPI07G09800
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	Chr7:7766154..7767789
RNA-Seq Expression	CSPI07G09800
Synteny	CSPI07G09800
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0010158 - abaxial cell fate specification (biological process) GO:0015074 - DNA integration (biological process) GO:0005634 - nucleus (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR041588 - Integrase zinc-binding domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8637561.1 hypothetical protein CSA_017659 [Cucumis sativus]

5.0e-217

76.37

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Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        VFSKLD+KS YHQIRM+E+DVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLR CVLVFFDDILVYS D++EHEKHLGMVFAV+RDN L A
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP
        NKKKCVIAHS+IQYLGH+ISS+GV+AD EKIKDMV WPQPKDVTGLRGFLGL+GYYRRFVKGYGEIA PLT+LLQKNSF+W E+AT AF+KLK AMTT+P
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP

Query:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT
        VLALP+W+LPF+IETDASG  LGAVLSQNGHPIAFFSQ LS RA+ KSIYERELM VVLS                            REVQPQFQKWLT
Subjt:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT

Query:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH
        KLLGYDFEILYQPGLQNKA DALS++E  +E+ S++T GIV+M V++KEV  DEEL+  I+ELK+NP   +KF W NG LLYKKR+VLSK S++IPTLLH
Subjt:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH

Query:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL
        TFHDSILGGHSGFLRTYKRM GELYW+GMKAD+KKYV++CE+CQRNK EATKPAGVL PIP P+ ILE WSMDFIEGLPKAGGMN   +++
Subjt:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL

KGN62557.2 hypothetical protein Csa_018739 [Cucumis sativus]

2.5e-248

88.8

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Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        VFSKLDLKSGYHQIRMKE+DVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMN VFKPFLR CVLVFFDDIL+YST+LTEHEKHL MVFAVMRDNQLVA
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP
        NKKKCVIAHSQIQYLGHLISSRGVEADG+KIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGE+A PLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP

Query:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT
        VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQ LSNRAKTKSIYERELMAVVLS                            REVQPQFQKWLT
Subjt:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT

Query:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH
        KLLGYDFEILYQPGLQNKA DALS+IEQPVEM++MSTTGIVNM VVEKEVELDEELKAIIEELK+NP E +KFQWVNGNL YKKRIVLSKESTLIPTLLH
Subjt:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH

Query:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL
        TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILE WSMDFIEGLPKAGGMN   +++
Subjt:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL

TYJ96663.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.3e-212

74.13

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Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        VFSKLDLKSGYHQIRM+E+D+EKTAFRTHEGHYEF+VMPFGLTNAPATFQSLMNQVFKPFLR CVLVFFDDILVYS+D+TEHEKHLGMVFA +RDNQL A
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP
        N+KKCV AHSQI YLGH+IS  GVEAD +K+K M+ WP+PKDVTGLRGFLGLTGYYRRFVKGYGEIA PLTKLLQKN+F W E AT AF+ LK AM+T+P
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP

Query:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT
        VLALPDW+LPF+IETDASG  LGAVLSQN HPIAFFSQ LS RA+ KSIYERELMAVVLS                            REVQPQFQKWLT
Subjt:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT

Query:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH
        KLLGYDFEILYQPGLQNKA DALS+++  +E++++STTGIV+M VV KEVE DEEL+ +I++L+ NP    K+   NG L+YK R+VLSK S++IP+LLH
Subjt:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH

Query:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL
        TFHDSILGGHSGFLRTYKRM GEL+WKGMK D+KKYV++CE+CQRNK EATKPAGVLQP+PIP+RILE W+MDFIEGLPKAGGMN   +++
Subjt:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL

TYK21035.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.3e-212

74.13

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Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        VFSKLDLKSGYHQIRM+E+D+EKTAFRTHEGHYEF+VMPFGLTNAPATFQSLMNQVFKPFLR CVLVFFDDILVYS+D+TEHEKHLGMVFA +RDNQL A
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP
        N+KKCV AHSQI YLGH+IS  GVEAD +K+K M+ WP+PKDVTGLRGFLGLTGYYRRFVKGYGEIA PLTKLLQKN+F W E AT AF+ LK AM+T+P
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP

Query:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT
        VLALPDW+LPF+IETDASG  LGAVLSQN HPIAFFSQ LS RA+ KSIYERELMAVVLS                            REVQPQFQKWLT
Subjt:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT

Query:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH
        KLLGYDFEILYQPGLQNKA DALS+++  +E++++STTGIV+M VV KEVE DEEL+ +I++L+ NP    K+   NG L+YK R+VLSK S++IP+LLH
Subjt:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH

Query:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL
        TFHDSILGGHSGFLRTYKRM GEL+WKGMK D+KKYV++CE+CQRNK EATKPAGVLQP+PIP+RILE W+MDFIEGLPKAGGMN   +++
Subjt:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL

TYK28944.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.3e-212

74.13

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Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        VFSKLDLKSGYHQIRM+E+D+EKTAFRTHEGHYEF+VMPFGLTNAPATFQSLMNQVFKPFLR CVLVFFDDILVYS+D+TEHEKHLGMVFA +RDNQL A
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP
        N+KKCV AHSQI YLGH+IS  GVEAD +K+K M+ WP+PKDVTGLRGFLGLTGYYRRFVKGYGEIA PLTKLLQKN+F W E AT AF+ LK AM+T+P
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP

Query:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT
        VLALPDW+LPF+IETDASG  LGAVLSQN HPIAFFSQ LS RA+ KSIYERELMAVVLS                            REVQPQFQKWLT
Subjt:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT

Query:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH
        KLLGYDFEILYQPGLQNKA DALS+++  +E++++STTGIV+M VV KEVE DEEL+ +I++L+ NP    K+   NG L+YK R+VLSK S++IP+LLH
Subjt:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH

Query:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL
        TFHDSILGGHSGFLRTYKRM GEL+WKGMK D+KKYV++CE+CQRNK EATKPAGVLQP+PIP+RILE W+MDFIEGLPKAGGMN   +++
Subjt:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BBH7 Ty3/gypsy retrotransposon protein

6.2e-213

74.13

Show/hide

Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        VFSKLDLKSGYHQIRM+E+D+EKTAFRTHEGHYEF+VMPFGLTNAPATFQSLMNQVFKPFLR CVLVFFDDILVYS+D+TEHEKHLGMVFA +RDNQL A
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP
        N+KKCV AHSQI YLGH+IS  GVEAD +K+K M+ WP+PKDVTGLRGFLGLTGYYRRFVKGYGEIA PLTKLLQKN+F W E AT AF+ LK AM+T+P
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP

Query:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT
        VLALPDW+LPF+IETDASG  LGAVLSQN HPIAFFSQ LS RA+ KSIYERELMAVVLS                            REVQPQFQKWLT
Subjt:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT

Query:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH
        KLLGYDFEILYQPGLQNKA DALS+++  +E++++STTGIV+M VV KEVE DEEL+ +I++L+ NP    K+   NG L+YK R+VLSK S++IP+LLH
Subjt:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH

Query:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL
        TFHDSILGGHSGFLRTYKRM GEL+WKGMK D+KKYV++CE+CQRNK EATKPAGVLQP+PIP+RILE W+MDFIEGLPKAGGMN   +++
Subjt:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL

A0A5D3DU86 Ty3/gypsy retrotransposon protein

6.2e-213

74.13

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Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        VFSKLDLKSGYHQIRM+E+D+EKTAFRTHEGHYEF+VMPFGLTNAPATFQSLMNQVFKPFLR CVLVFFDDILVYS+D+TEHEKHLGMVFA +RDNQL A
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP
        N+KKCV AHSQI YLGH+IS  GVEAD +K+K M+ WP+PKDVTGLRGFLGLTGYYRRFVKGYGEIA PLTKLLQKN+F W E AT AF+ LK AM+T+P
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP

Query:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT
        VLALPDW+LPF+IETDASG  LGAVLSQN HPIAFFSQ LS RA+ KSIYERELMAVVLS                            REVQPQFQKWLT
Subjt:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT

Query:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH
        KLLGYDFEILYQPGLQNKA DALS+++  +E++++STTGIV+M VV KEVE DEEL+ +I++L+ NP    K+   NG L+YK R+VLSK S++IP+LLH
Subjt:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH

Query:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL
        TFHDSILGGHSGFLRTYKRM GEL+WKGMK D+KKYV++CE+CQRNK EATKPAGVLQP+PIP+RILE W+MDFIEGLPKAGGMN   +++
Subjt:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL

A0A5D3DWA9 Ty3/gypsy retrotransposon protein

6.2e-213

74.13

Show/hide

Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        VFSKLDLKSGYHQIRM+E+D+EKTAFRTHEGHYEF+VMPFGLTNAPATFQSLMNQVFKPFLR CVLVFFDDILVYS+D+TEHEKHLGMVFA +RDNQL A
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP
        N+KKCV AHSQI YLGH+IS  GVEAD +K+K M+ WP+PKDVTGLRGFLGLTGYYRRFVKGYGEIA PLTKLLQKN+F W E AT AF+ LK AM+T+P
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP

Query:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT
        VLALPDW+LPF+IETDASG  LGAVLSQN HPIAFFSQ LS RA+ KSIYERELMAVVLS                            REVQPQFQKWLT
Subjt:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT

Query:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH
        KLLGYDFEILYQPGLQNKA DALS+++  +E++++STTGIV+M VV KEVE DEEL+ +I++L+ NP    K+   NG L+YK R+VLSK S++IP+LLH
Subjt:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH

Query:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL
        TFHDSILGGHSGFLRTYKRM GEL+WKGMK D+KKYV++CE+CQRNK EATKPAGVLQP+PIP+RILE W+MDFIEGLPKAGGMN   +++
Subjt:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL

A0A5D3DZK6 Ty3/gypsy retrotransposon protein

6.2e-213

74.13

Show/hide

Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        VFSKLDLKSGYHQIRM+E+D+EKTAFRTHEGHYEF+VMPFGLTNAPATFQSLMNQVFKPFLR CVLVFFDDILVYS+D+TEHEKHLGMVFA +RDNQL A
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP
        N+KKCV AHSQI YLGH+IS  GVEAD +K+K M+ WP+PKDVTGLRGFLGLTGYYRRFVKGYGEIA PLTKLLQKN+F W E AT AF+ LK AM+T+P
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP

Query:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT
        VLALPDW+LPF+IETDASG  LGAVLSQN HPIAFFSQ LS RA+ KSIYERELMAVVLS                            REVQPQFQKWLT
Subjt:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT

Query:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH
        KLLGYDFEILYQPGLQNKA DALS+++  +E++++STTGIV+M VV KEVE DEEL+ +I++L+ NP    K+   NG L+YK R+VLSK S++IP+LLH
Subjt:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH

Query:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL
        TFHDSILGGHSGFLRTYKRM GEL+WKGMK D+KKYV++CE+CQRNK EATKPAGVLQP+PIP+RILE W+MDFIEGLPKAGGMN   +++
Subjt:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL

A0A5D3E325 Ty3/gypsy retrotransposon protein

6.2e-213

74.13

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Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        VFSKLDLKSGYHQIRM+E+D+EKTAFRTHEGHYEF+VMPFGLTNAPATFQSLMNQVFKPFLR CVLVFFDDILVYS+D+TEHEKHLGMVFA +RDNQL A
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP
        N+KKCV AHSQI YLGH+IS  GVEAD +K+K M+ WP+PKDVTGLRGFLGLTGYYRRFVKGYGEIA PLTKLLQKN+F W E AT AF+ LK AM+T+P
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLP

Query:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT
        VLALPDW+LPF+IETDASG  LGAVLSQN HPIAFFSQ LS RA+ KSIYERELMAVVLS                            REVQPQFQKWLT
Subjt:  VLALPDWNLPFIIETDASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLS----------------------------REVQPQFQKWLT

Query:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH
        KLLGYDFEILYQPGLQNKA DALS+++  +E++++STTGIV+M VV KEVE DEEL+ +I++L+ NP    K+   NG L+YK R+VLSK S++IP+LLH
Subjt:  KLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDEELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLH

Query:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL
        TFHDSILGGHSGFLRTYKRM GEL+WKGMK D+KKYV++CE+CQRNK EATKPAGVLQP+PIP+RILE W+MDFIEGLPKAGGMN   +++
Subjt:  TFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEGLPKAGGMNAEQILL

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

8.1e-69

32.42

Show/hide

Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        +F+KLDLKS YH IR+++ D  K AFR   G +E+LVMP+G++ APA FQ  +N +      S V+ + DDIL++S   +EH KH+  V   +++  L+ 
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKN-SFLWGEEATEAFDKLKLAMTTL
        N+ KC    SQ++++G+ IS +G     E I  ++ W QPK+   LR FLG   Y R+F+    ++  PL  LL+K+  + W    T+A + +K  + + 
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKN-SFLWGEEATEAFDKLKLAMTTL

Query:  PVLALPDWNLPFIIETDASGIALGAVLSQNG-----HPIAFFSQILSNRAKTKSIYERELMAVV-----------------------------LSREVQP
        PVL   D++   ++ETDAS +A+GAVLSQ       +P+ ++S  +S      S+ ++E++A++                             ++ E +P
Subjt:  PVLALPDWNLPFIIETDASGIALGAVLSQNG-----HPIAFFSQILSNRAKTKSIYERELMAVV-----------------------------LSREVQP

Query:  Q---FQKWLTKLLGYDFEILYQPGLQNKAVDALSQI---EQPVEMRSM-STTGIVNMV--------VVEKEVELDEELKAIIEELKKNPHESNKFQWVNG
        +     +W   L  ++FEI Y+PG  N   DALS+I    +P+   S  ++   VN +         V  E   D +L  ++    K   E+   Q  +G
Subjt:  Q---FQKWLTKLLGYDFEILYQPGLQNKAVDALSQI---EQPVEMRSM-STTGIVNMV--------VVEKEVELDEELKAIIEELKKNPHESNKFQWVNG

Query:  NLLYKK-RIVLSKESTLIPTLLHTFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEG
         L+  K +I+L  ++ L  T++  +H+     H G       +     WKG++  +++YVQ C  CQ NK    KP G LQPIP  ER  E  SMDFI  
Subjt:  NLLYKK-RIVLSKESTLIPTLLHTFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEG

Query:  LPKAGGMNA
        LP++ G NA
Subjt:  LPKAGGMNA

P0CT35 Transposon Tf2-2 polyprotein

8.1e-69

32.42

Show/hide

Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        +F+KLDLKS YH IR+++ D  K AFR   G +E+LVMP+G++ APA FQ  +N +      S V+ + DDIL++S   +EH KH+  V   +++  L+ 
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKN-SFLWGEEATEAFDKLKLAMTTL
        N+ KC    SQ++++G+ IS +G     E I  ++ W QPK+   LR FLG   Y R+F+    ++  PL  LL+K+  + W    T+A + +K  + + 
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKN-SFLWGEEATEAFDKLKLAMTTL

Query:  PVLALPDWNLPFIIETDASGIALGAVLSQNG-----HPIAFFSQILSNRAKTKSIYERELMAVV-----------------------------LSREVQP
        PVL   D++   ++ETDAS +A+GAVLSQ       +P+ ++S  +S      S+ ++E++A++                             ++ E +P
Subjt:  PVLALPDWNLPFIIETDASGIALGAVLSQNG-----HPIAFFSQILSNRAKTKSIYERELMAVV-----------------------------LSREVQP

Query:  Q---FQKWLTKLLGYDFEILYQPGLQNKAVDALSQI---EQPVEMRSM-STTGIVNMV--------VVEKEVELDEELKAIIEELKKNPHESNKFQWVNG
        +     +W   L  ++FEI Y+PG  N   DALS+I    +P+   S  ++   VN +         V  E   D +L  ++    K   E+   Q  +G
Subjt:  Q---FQKWLTKLLGYDFEILYQPGLQNKAVDALSQI---EQPVEMRSM-STTGIVNMV--------VVEKEVELDEELKAIIEELKKNPHESNKFQWVNG

Query:  NLLYKK-RIVLSKESTLIPTLLHTFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEG
         L+  K +I+L  ++ L  T++  +H+     H G       +     WKG++  +++YVQ C  CQ NK    KP G LQPIP  ER  E  SMDFI  
Subjt:  NLLYKK-RIVLSKESTLIPTLLHTFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEG

Query:  LPKAGGMNA
        LP++ G NA
Subjt:  LPKAGGMNA

P0CT36 Transposon Tf2-3 polyprotein

8.1e-69

32.42

Show/hide

Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        +F+KLDLKS YH IR+++ D  K AFR   G +E+LVMP+G++ APA FQ  +N +      S V+ + DDIL++S   +EH KH+  V   +++  L+ 
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKN-SFLWGEEATEAFDKLKLAMTTL
        N+ KC    SQ++++G+ IS +G     E I  ++ W QPK+   LR FLG   Y R+F+    ++  PL  LL+K+  + W    T+A + +K  + + 
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKN-SFLWGEEATEAFDKLKLAMTTL

Query:  PVLALPDWNLPFIIETDASGIALGAVLSQNG-----HPIAFFSQILSNRAKTKSIYERELMAVV-----------------------------LSREVQP
        PVL   D++   ++ETDAS +A+GAVLSQ       +P+ ++S  +S      S+ ++E++A++                             ++ E +P
Subjt:  PVLALPDWNLPFIIETDASGIALGAVLSQNG-----HPIAFFSQILSNRAKTKSIYERELMAVV-----------------------------LSREVQP

Query:  Q---FQKWLTKLLGYDFEILYQPGLQNKAVDALSQI---EQPVEMRSM-STTGIVNMV--------VVEKEVELDEELKAIIEELKKNPHESNKFQWVNG
        +     +W   L  ++FEI Y+PG  N   DALS+I    +P+   S  ++   VN +         V  E   D +L  ++    K   E+   Q  +G
Subjt:  Q---FQKWLTKLLGYDFEILYQPGLQNKAVDALSQI---EQPVEMRSM-STTGIVNMV--------VVEKEVELDEELKAIIEELKKNPHESNKFQWVNG

Query:  NLLYKK-RIVLSKESTLIPTLLHTFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEG
         L+  K +I+L  ++ L  T++  +H+     H G       +     WKG++  +++YVQ C  CQ NK    KP G LQPIP  ER  E  SMDFI  
Subjt:  NLLYKK-RIVLSKESTLIPTLLHTFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEG

Query:  LPKAGGMNA
        LP++ G NA
Subjt:  LPKAGGMNA

P0CT37 Transposon Tf2-4 polyprotein

8.1e-69

32.42

Show/hide

Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        +F+KLDLKS YH IR+++ D  K AFR   G +E+LVMP+G++ APA FQ  +N +      S V+ + DDIL++S   +EH KH+  V   +++  L+ 
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKN-SFLWGEEATEAFDKLKLAMTTL
        N+ KC    SQ++++G+ IS +G     E I  ++ W QPK+   LR FLG   Y R+F+    ++  PL  LL+K+  + W    T+A + +K  + + 
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKN-SFLWGEEATEAFDKLKLAMTTL

Query:  PVLALPDWNLPFIIETDASGIALGAVLSQNG-----HPIAFFSQILSNRAKTKSIYERELMAVV-----------------------------LSREVQP
        PVL   D++   ++ETDAS +A+GAVLSQ       +P+ ++S  +S      S+ ++E++A++                             ++ E +P
Subjt:  PVLALPDWNLPFIIETDASGIALGAVLSQNG-----HPIAFFSQILSNRAKTKSIYERELMAVV-----------------------------LSREVQP

Query:  Q---FQKWLTKLLGYDFEILYQPGLQNKAVDALSQI---EQPVEMRSM-STTGIVNMV--------VVEKEVELDEELKAIIEELKKNPHESNKFQWVNG
        +     +W   L  ++FEI Y+PG  N   DALS+I    +P+   S  ++   VN +         V  E   D +L  ++    K   E+   Q  +G
Subjt:  Q---FQKWLTKLLGYDFEILYQPGLQNKAVDALSQI---EQPVEMRSM-STTGIVNMV--------VVEKEVELDEELKAIIEELKKNPHESNKFQWVNG

Query:  NLLYKK-RIVLSKESTLIPTLLHTFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEG
         L+  K +I+L  ++ L  T++  +H+     H G       +     WKG++  +++YVQ C  CQ NK    KP G LQPIP  ER  E  SMDFI  
Subjt:  NLLYKK-RIVLSKESTLIPTLLHTFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEG

Query:  LPKAGGMNA
        LP++ G NA
Subjt:  LPKAGGMNA

P0CT41 Transposon Tf2-12 polyprotein

8.1e-69

32.42

Show/hide

Query:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA
        +F+KLDLKS YH IR+++ D  K AFR   G +E+LVMP+G++ APA FQ  +N +      S V+ + DDIL++S   +EH KH+  V   +++  L+ 
Subjt:  VFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVA

Query:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKN-SFLWGEEATEAFDKLKLAMTTL
        N+ KC    SQ++++G+ IS +G     E I  ++ W QPK+   LR FLG   Y R+F+    ++  PL  LL+K+  + W    T+A + +K  + + 
Subjt:  NKKKCVIAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKN-SFLWGEEATEAFDKLKLAMTTL

Query:  PVLALPDWNLPFIIETDASGIALGAVLSQNG-----HPIAFFSQILSNRAKTKSIYERELMAVV-----------------------------LSREVQP
        PVL   D++   ++ETDAS +A+GAVLSQ       +P+ ++S  +S      S+ ++E++A++                             ++ E +P
Subjt:  PVLALPDWNLPFIIETDASGIALGAVLSQNG-----HPIAFFSQILSNRAKTKSIYERELMAVV-----------------------------LSREVQP

Query:  Q---FQKWLTKLLGYDFEILYQPGLQNKAVDALSQI---EQPVEMRSM-STTGIVNMV--------VVEKEVELDEELKAIIEELKKNPHESNKFQWVNG
        +     +W   L  ++FEI Y+PG  N   DALS+I    +P+   S  ++   VN +         V  E   D +L  ++    K   E+   Q  +G
Subjt:  Q---FQKWLTKLLGYDFEILYQPGLQNKAVDALSQI---EQPVEMRSM-STTGIVNMV--------VVEKEVELDEELKAIIEELKKNPHESNKFQWVNG

Query:  NLLYKK-RIVLSKESTLIPTLLHTFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEG
         L+  K +I+L  ++ L  T++  +H+     H G       +     WKG++  +++YVQ C  CQ NK    KP G LQPIP  ER  E  SMDFI  
Subjt:  NLLYKK-RIVLSKESTLIPTLLHTFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPERILEGWSMDFIEG

Query:  LPKAGGMNA
        LP++ G NA
Subjt:  LPKAGGMNA

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

1.8e-39

60.77

Show/hide

Query:  HLGMVFAVMRDNQLVANKKKCVIAHSQIQYLG--HLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWG
        HLGMV  +   +Q  AN+KKC     QI YLG  H+IS  GV AD  K++ MV WP+PK+ T LRGFLGLTGYYRRFVK YG+I  PLT+LL+KNS  W 
Subjt:  HLGMVFAVMRDNQLVANKKKCVIAHSQIQYLG--HLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWG

Query:  EEATEAFDKLKLAMTTLPVLALPDWNLPFI
        E A  AF  LK A+TTLPVLALPD  LPF+
Subjt:  EEATEAFDKLKLAMTTLPVLALPDWNLPFI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGGGTGGAGTTTTCTCAAAATTGGATCTCAAATCTGGATATCATCAGATACGGATGAAGGAGGATGATGTGGAAAAGACAGCGTTCAGAACCCATGAAGGACACTA
CGAGTTTCTGGTCATGCCGTTCGGCCTCACTAACGCACCAGCTACTTTCCAATCATTAATGAATCAGGTCTTTAAACCCTTCCTCAGGAGTTGTGTACTGGTATTTTTTG
ATGATATATTAGTGTACAGCACAGATCTCACAGAGCACGAAAAGCATTTGGGCATGGTTTTTGCAGTAATGCGGGATAACCAATTAGTTGCCAACAAAAAAAAATGCGTA
ATAGCTCATTCACAGATTCAATATTTGGGGCATTTAATATCCAGTAGAGGGGTTGAAGCTGATGGAGAAAAGATCAAGGATATGGTAAATTGGCCCCAACCCAAAGATGT
AACCGGATTGAGGGGGTTCTTAGGTCTGACTGGTTACTATAGAAGATTCGTCAAAGGGTATGGAGAGATAGCAGGACCGTTGACCAAATTATTGCAGAAGAACTCATTCC
TATGGGGGGAAGAAGCAACAGAGGCGTTTGATAAGCTGAAATTAGCCATGACAACCCTACCTGTACTAGCTCTACCAGATTGGAACCTACCTTTCATCATTGAAACGGAT
GCGTCCGGGATTGCTTTAGGGGCAGTTCTATCTCAAAATGGCCATCCCATAGCTTTTTTCAGTCAAATACTATCGAACCGAGCTAAAACCAAATCCATATATGAGAGGGA
ATTGATGGCTGTGGTTCTGTCGAGGGAAGTGCAACCCCAATTCCAGAAGTGGCTGACTAAACTCCTCGGGTATGACTTCGAAATACTTTACCAACCCGGATTACAAAACA
AAGCAGTCGATGCCCTCTCCCAAATCGAACAGCCAGTGGAAATGAGGAGTATGTCCACCACGGGTATTGTCAACATGGTGGTGGTTGAGAAGGAAGTTGAGTTAGATGAA
GAGCTCAAGGCAATCATTGAAGAATTAAAAAAAAATCCTCACGAGTCCAATAAATTCCAATGGGTGAATGGAAACCTACTGTATAAGAAGCGAATTGTTTTGTCAAAAGA
ATCCACTCTGATCCCCACCTTACTACATACGTTTCATGACTCCATTTTAGGAGGCCATTCCGGATTCTTAAGGACGTATAAAAGGATGTGTGGGGAATTGTATTGGAAAG
GTATGAAGGCTGATGTTAAAAAATATGTGCAGGAATGCGAGGTTTGCCAGAGAAATAAGTTGGAAGCAACTAAACCAGCTGGAGTTCTGCAGCCAATTCCAATTCCAGAA
AGAATCTTGGAAGGCTGGTCCATGGACTTCATTGAAGGGCTACCTAAAGCAGGAGGTATGAATGCTGAGCAAATACTCCTACTTTATCACCATGAGGCATCCTTTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEGGVFSKLDLKSGYHQIRMKEDDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRSCVLVFFDDILVYSTDLTEHEKHLGMVFAVMRDNQLVANKKKCV
IAHSQIQYLGHLISSRGVEADGEKIKDMVNWPQPKDVTGLRGFLGLTGYYRRFVKGYGEIAGPLTKLLQKNSFLWGEEATEAFDKLKLAMTTLPVLALPDWNLPFIIETD
ASGIALGAVLSQNGHPIAFFSQILSNRAKTKSIYERELMAVVLSREVQPQFQKWLTKLLGYDFEILYQPGLQNKAVDALSQIEQPVEMRSMSTTGIVNMVVVEKEVELDE
ELKAIIEELKKNPHESNKFQWVNGNLLYKKRIVLSKESTLIPTLLHTFHDSILGGHSGFLRTYKRMCGELYWKGMKADVKKYVQECEVCQRNKLEATKPAGVLQPIPIPE
RILEGWSMDFIEGLPKAGGMNAEQILLLYHHEASF

CSPI07G09800 (gene) of Cucumber (PI 183967) v1 genome