CuGenDBv2

Gene ID	CSPI07G09810
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	Chr7:7767932..7768478
RNA-Seq Expression	CSPI07G09810
Synteny	CSPI07G09810
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0098869 - cellular oxidant detoxification (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004601 - peroxidase activity (molecular function)
InterPro domains	IPR021109 - Aspartic peptidase domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039128.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

8.2e-52

67.57

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Query:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI
        L +E HT FG TIG+GTRC+G+G+C R+E+KL+EITI+ADFLA+ELGSVD +LGMQWL+TTGTMKIHWPSLTM+F  G +QIILKGDPSLIRAECS++T+
Subjt:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI

Query:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ
        EKTW+E+DQGFLLE  + E E +      ++ KGDE + PMI+FLLQQ
Subjt:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ

KAA0042860.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.3e-52

62.84

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Query:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI
        + ++++T FGVTIGDGT C+G+G+C R+E++L+ +T+VADFLA+ELG VD++LGMQWL+TTGTMK+HWPSLTM F  G+ +++LKGDPSLIRAECS+KTI
Subjt:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI

Query:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ
        EKTWE +DQGFL+E Q+YE E+D +  + Q  +G+EE+ PMI+FLL Q
Subjt:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ

KAA0055376.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.4e-51

66.22

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Query:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI
        L ++ HTPFG TIG+GTRC+G+G+C R+E+KL EITI+ADFLA+ELGSVD +LGMQWL+TTGTMKIHWPSLTM+F  G +QI+LKGDPSLIRAECS++T+
Subjt:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI

Query:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ
        EKTW+E+DQGFLLE  + + E D      ++ +GDE + PMI+FLLQQ
Subjt:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ

TYJ99303.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.4e-51

66.22

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Query:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI
        L ++ HTPFG TIG+GTRC+G+G+C R+E+KL EITI+ADFLA+ELGSVD +LGMQWL+TTGTMKIHWPSLTM+F  G +QI+LKGDPSLIRAECS++T+
Subjt:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI

Query:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ
        EKTW+E+DQGFLLE  + + E D      ++ +GDE + PMI+FLLQQ
Subjt:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ

XP_031745528.1 uncharacterized protein LOC116405915 [Cucumis sativus]

2.6e-74

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Query:  MGLELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMK
        +GLELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVD+ILGMQWLNTTGTMKIHWPSLTMTF+MGKKQ ILKGDPSLIRAECS+K
Subjt:  MGLELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMK

Query:  TIEKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ
        TIEKTWEEDDQGFLLEMQ+YEAEEDGE DEVQR KGDEEESPMIQ LLQQ
Subjt:  TIEKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T8C0 Ty3/gypsy retrotransposon protein

4.0e-52

67.57

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Query:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI
        L +E HT FG TIG+GTRC+G+G+C R+E+KL+EITI+ADFLA+ELGSVD +LGMQWL+TTGTMKIHWPSLTM+F  G +QIILKGDPSLIRAECS++T+
Subjt:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI

Query:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ
        EKTW+E+DQGFLLE  + E E +      ++ KGDE + PMI+FLLQQ
Subjt:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ

A0A5A7TYW6 Reverse transcriptase domain-containing protein

1.5e-51

66.89

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Query:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI
        L +E HT FG TIG+GTRC+G+G+C R+E+KL+EITI+ADFLA+EL S+D +LGMQWL+TTGTMKIHWPSLTM+F  G +QIILKGDPSLIRAECS++T+
Subjt:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI

Query:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ
        EKTW+EDDQGFLLE  + E E +      ++ KGDE + PMI+FLLQQ
Subjt:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ

A0A5A7UM77 Ty3/gypsy retrotransposon protein

1.2e-51

66.22

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Query:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI
        L ++ HTPFG TIG+GTRC+G+G+C R+E+KL EITI+ADFLA+ELGSVD +LGMQWL+TTGTMKIHWPSLTM+F  G +QI+LKGDPSLIRAECS++T+
Subjt:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI

Query:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ
        EKTW+E+DQGFLLE  + + E D      ++ +GDE + PMI+FLLQQ
Subjt:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ

A0A5D3BJ50 Ty3/gypsy retrotransposon protein

1.2e-51

66.22

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Query:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI
        L ++ HTPFG TIG+GTRC+G+G+C R+E+KL EITI+ADFLA+ELGSVD +LGMQWL+TTGTMKIHWPSLTM+F  G +QI+LKGDPSLIRAECS++T+
Subjt:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI

Query:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ
        EKTW+E+DQGFLLE  + + E D      ++ +GDE + PMI+FLLQQ
Subjt:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ

A0A5D3C1M5 Ty3-gypsy retrotransposon protein

3.0e-52

62.84

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Query:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI
        + ++++T FGVTIGDGT C+G+G+C R+E++L+ +T+VADFLA+ELG VD++LGMQWL+TTGTMK+HWPSLTM F  G+ +++LKGDPSLIRAECS+KTI
Subjt:  LELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTI

Query:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ
        EKTWE +DQGFL+E Q+YE E+D +  + Q  +G+EE+ PMI+FLL Q
Subjt:  EKTWEEDDQGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G29750.1 Eukaryotic aspartyl protease family protein

6.1e-05

25.66

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Query:  VTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELG--SVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTIEKTWEEDD
        V +G     Q  G C  + L ++E+ I  +FL ++L    VD+ILG +WL+  G   ++W +   +F   ++ I L  +   +     + T  K   E++
Subjt:  VTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELG--SVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTIEKTWEEDD

Query:  QGFLLEMQSYEAE
        Q  + E ++ + E
Subjt:  QGFLLEMQSYEAE

AT3G42723.1 aminoacyl-tRNA ligases;ATP binding;nucleotide binding

5.2e-04

26.32

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Query:  CNRLELKLKEITIVADFLAIEL--GSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTIEKTWEEDDQGFLLEMQS
        C  + L++ +I IV D+   +L    VD+ILG +WL+  G  +++W + + +F   +  + L   P     E   K ++   E++  G   E++S
Subjt:  CNRLELKLKEITIVADFLAIEL--GSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTIEKTWEEDDQGFLLEMQS

Sequences

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CDS sequence

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ATGGGACTGGAGTTAGAGAATCATACTCCTTTTGGAGTCACTATCGGAGATGGTACAAGATGCCAAGGAAGAGGCGTGTGTAACAGGTTAGAACTAAAACTTAAAGAGAT
CACGATCGTGGCTGATTTTTTAGCAATTGAACTTGGGAGTGTAGATATTATTCTAGGGATGCAATGGCTGAACACAACGGGAACCATGAAGATACACTGGCCATCCCTGA
CCATGACATTTCAGATGGGAAAGAAACAAATTATCCTAAAGGGAGATCCTTCACTTATTAGGGCAGAGTGCTCTATGAAAACCATTGAAAAAACATGGGAAGAGGACGAC
CAAGGCTTCTTACTAGAAATGCAGAGCTATGAGGCAGAGGAAGATGGGGAATCAGATGAAGTACAGAGAGCGAAGGGGGATGAGGAAGAATCTCCAATGATTCAATTCTT
ACTCCAGCAAAACCTATCAATGTGA

mRNA sequence

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Protein sequence

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MGLELENHTPFGVTIGDGTRCQGRGVCNRLELKLKEITIVADFLAIELGSVDIILGMQWLNTTGTMKIHWPSLTMTFQMGKKQIILKGDPSLIRAECSMKTIEKTWEEDD
QGFLLEMQSYEAEEDGESDEVQRAKGDEEESPMIQFLLQQNLSM

CSPI07G09810 (gene) of Cucumber (PI 183967) v1 genome