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CSPI07G09970 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G09970
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr7:8033996..8034430
RNA-Seq ExpressionCSPI07G09970
SyntenyCSPI07G09970
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0015074 - DNA integration (biological process)
GO:0042254 - ribosome biogenesis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036990.1 protein SDA1-like protein isoform X2 [Cucumis melo var. makuwa]1.2e-4458.04Show/hide
Query:  MKRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIP
        +KRR V ++ GD+V LK+RPY+QV++R++RNEKLSPK FGSYKV+ KIG +AY+LEL   +TIHPVFH+SQLK+A G+ +  +   P +TE HE W  +P
Subjt:  MKRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIP

Query:  EEVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPDF
        +E +GY KN  G W+VL+ WKGLP HEATWE Y+D +Q FPD+
Subjt:  EEVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPDF

KAA0039185.1 IST1-like protein [Cucumis melo var. makuwa]4.4e-4762.41Show/hide
Query:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE
        KRR+V Y+VGD+V LKIRPY+QV++R++RNEKL+PK FG Y +I KIG +AYKLEL  +S+IHPVFHVSQLKK  GEH+ +  ++P +TENHE W++IPE
Subjt:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE

Query:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPD
        E+ GY KNK   WDVLV+WKGLP+ E TWE Y++++QR+P+
Subjt:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPD

KAA0052896.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-4662.41Show/hide
Query:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE
        KRR+V Y+VGD+V LKIRPY+QV++R++RNEKL+PK FG YK+I KIG +AYKLEL  +S+IHPVFHVSQLKK  GEH+ +  + P +TENHE W++IPE
Subjt:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE

Query:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPD
        E+ GY KNK   WDVLV+WKGL + E TWE Y++++QR+P+
Subjt:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPD

TYK14463.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-4662.41Show/hide
Query:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE
        KRR+V Y+VGD+V LKIRPY+QV++R++RNEKL+PK FG YK+I KIG +AYKLEL  +S+IHPVFHVSQLKK  GEH+ +  + P +TENHE W++IPE
Subjt:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE

Query:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPD
        E+ GY KNK   WDVLV+WKGL + E TWE Y++++QR+P+
Subjt:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPD

TYK29737.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]4.1e-4561.27Show/hide
Query:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE
        K+R V Y VG+LV LKIRPY+Q+T+RRKRNEKLSPK FG YK++ +IG + YKLEL  +++IHPVFHVSQL+K MG HEE R  +  L +  E WR  PE
Subjt:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE

Query:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPDF
        E+  Y KNK GSW+VL+ WKGLPQHEA+WE Y+ ++Q++PDF
Subjt:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPDF

TrEMBL top hitse value%identityAlignment
A0A5A7T0V2 Protein SDA1-like protein isoform X25.8e-4558.04Show/hide
Query:  MKRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIP
        +KRR V ++ GD+V LK+RPY+QV++R++RNEKLSPK FGSYKV+ KIG +AY+LEL   +TIHPVFH+SQLK+A G+ +  +   P +TE HE W  +P
Subjt:  MKRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIP

Query:  EEVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPDF
        +E +GY KN  G W+VL+ WKGLP HEATWE Y+D +Q FPD+
Subjt:  EEVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPDF

A0A5A7UFA3 Ty3/gypsy retrotransposon protein1.4e-4662.41Show/hide
Query:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE
        KRR+V Y+VGD+V LKIRPY+QV++R++RNEKL+PK FG YK+I KIG +AYKLEL  +S+IHPVFHVSQLKK  GEH+ +  + P +TENHE W++IPE
Subjt:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE

Query:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPD
        E+ GY KNK   WDVLV+WKGL + E TWE Y++++QR+P+
Subjt:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPD

A0A5D3CRH2 Ty3/gypsy retrotransposon protein1.4e-4662.41Show/hide
Query:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE
        KRR+V Y+VGD+V LKIRPY+QV++R++RNEKL+PK FG YK+I KIG +AYKLEL  +S+IHPVFHVSQLKK  GEH+ +  + P +TENHE W++IPE
Subjt:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE

Query:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPD
        E+ GY KNK   WDVLV+WKGL + E TWE Y++++QR+P+
Subjt:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPD

A0A5D3D4I0 IST1-like protein2.1e-4762.41Show/hide
Query:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE
        KRR+V Y+VGD+V LKIRPY+QV++R++RNEKL+PK FG Y +I KIG +AYKLEL  +S+IHPVFHVSQLKK  GEH+ +  ++P +TENHE W++IPE
Subjt:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE

Query:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPD
        E+ GY KNK   WDVLV+WKGLP+ E TWE Y++++QR+P+
Subjt:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPD

A0A5D3E0W3 Transposon Ty3-G Gag-Pol polyprotein2.0e-4561.27Show/hide
Query:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE
        K+R V Y VG+LV LKIRPY+Q+T+RRKRNEKLSPK FG YK++ +IG + YKLEL  +++IHPVFHVSQL+K MG HEE R  +  L +  E WR  PE
Subjt:  KRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPE

Query:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPDF
        E+  Y KNK GSW+VL+ WKGLPQHEA+WE Y+ ++Q++PDF
Subjt:  EVYGYSKNKPGSWDVLVQWKGLPQHEATWELYEDLKQRFPDF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGAAGAGAAGTTCATTACCAAGTTGGAGATTTGGTATTGTTAAAGATAAGACCATATCAGCAAGTAACTGTCAGAAGAAAAAGAAATGAAAAACTCTCTCCTAA
ATTATTTGGGTCGTACAAAGTGATAGCTAAAATTGGTCAGATAGCTTACAAGCTAGAACTTCTAGAGAATTCTACCATACACCCGGTATTTCATGTATCGCAGCTAAAGA
AAGCAATGGGAGAGCACGAGGAAGACAGGAATGACGTTCCATGTTTAACTGAAAATCATGAATATTGGAGAGATATTCCAGAAGAGGTTTATGGTTATTCGAAAAACAAA
CCGGGAAGTTGGGATGTGTTGGTGCAGTGGAAGGGTCTTCCACAACATGAGGCTACTTGGGAGTTATATGAGGATTTGAAGCAGCGGTTTCCAGATTTTAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGAAGAGAAGTTCATTACCAAGTTGGAGATTTGGTATTGTTAAAGATAAGACCATATCAGCAAGTAACTGTCAGAAGAAAAAGAAATGAAAAACTCTCTCCTAA
ATTATTTGGGTCGTACAAAGTGATAGCTAAAATTGGTCAGATAGCTTACAAGCTAGAACTTCTAGAGAATTCTACCATACACCCGGTATTTCATGTATCGCAGCTAAAGA
AAGCAATGGGAGAGCACGAGGAAGACAGGAATGACGTTCCATGTTTAACTGAAAATCATGAATATTGGAGAGATATTCCAGAAGAGGTTTATGGTTATTCGAAAAACAAA
CCGGGAAGTTGGGATGTGTTGGTGCAGTGGAAGGGTCTTCCACAACATGAGGCTACTTGGGAGTTATATGAGGATTTGAAGCAGCGGTTTCCAGATTTTAGGTGA
Protein sequenceShow/hide protein sequence
MKRREVHYQVGDLVLLKIRPYQQVTVRRKRNEKLSPKLFGSYKVIAKIGQIAYKLELLENSTIHPVFHVSQLKKAMGEHEEDRNDVPCLTENHEYWRDIPEEVYGYSKNK
PGSWDVLVQWKGLPQHEATWELYEDLKQRFPDFR