; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI07G10580 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G10580
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPhotosystem II D1 processing protein PSB27-H2
Genome locationChr7:8654319..8655624
RNA-Seq ExpressionCSPI07G10580
SyntenyCSPI07G10580
Gene Ontology termsGO:0010206 - photosystem II repair (biological process)
GO:0010207 - photosystem II assembly (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domainsIPR025585 - Photosystem II Pbs27
IPR038450 - Photosystem II Pbs27 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040790.1 photosystem II D1 precursor processing protein PSB27-H2 [Cucumis melo var. makuwa]3.5e-7792.55Show/hide
Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK
        MAAFI AKICP TI TLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTFNNGLTPSSA AEEMPNNMEEED+GVIGTIKSIFDPNERTK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
        SGK+LPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQE
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
XP_008447146.1 PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo]9.2e-7893.17Show/hide
Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK
        MAAFI AKICP TISTLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTFNNGLTPSSA AEEMPNNMEEED+GVIGTIKSIFDPNERTK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
        SGK+LPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQE
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
XP_011659022.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X1 [Cucumis sativus]3.3e-8398.76Show/hide
Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK
        MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEED+GVIGTIKSIFDPNE+TK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
        SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
XP_011659023.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X2 [Cucumis sativus]3.0e-8198.14Show/hide
Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK
        MAAFIHAKICPTTISTLDRSLISEYG KLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEED+GVIGTIKSIFDPNE+TK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
        SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
XP_038875361.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida]1.1e-6785.71Show/hide
Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK
        MAAFI A ICPTTISTLDR+L SE G KL SRS+VVLP QEVCRRHL+ +GMSLVVFLT NNGLTPSSA+AEE PN+ EEED+GVIGTIKSIFDPNE+TK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
        SGK+LPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG++TVV+E
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
TrEMBL top hitse value%identityAlignment
A0A0A0K400 Uncharacterized protein1.6e-8398.76Show/hide
Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK
        MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEED+GVIGTIKSIFDPNE+TK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
        SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
A0A1S3BG68 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic4.4e-7893.17Show/hide
Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK
        MAAFI AKICP TISTLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTFNNGLTPSSA AEEMPNNMEEED+GVIGTIKSIFDPNERTK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
        SGK+LPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQE
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
A0A5D3D0K6 Photosystem II D1 processing protein PSB27-H21.7e-7792.55Show/hide
Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK
        MAAFI AKICP TI TLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTFNNGLTPSSA AEEMPNNMEEED+GVIGTIKSIFDPNERTK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
        SGK+LPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQE
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
A0A6J1CCV0 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic4.0e-6378.88Show/hide
Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK
        MAAF+ AKICP T S+LDR   SE G KL SRS+VVLP QEVCRR L+ NGMSLVVFL FNNG  P  A+AEE PN+ +EED+GV+G IKSIFDPNERTK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
        SGK+LPKAYLKSARE+VKTLRES+QEDPKDGAKFRRTADAAKESIRDYLSNWLG+QTV QE
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
A0A6J1H448 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic8.1e-6481.37Show/hide
Query:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK
        M AFI AKICP TISTLDR + SE G KL SRS+VVLP QE+CRR L+ NGMS V FLTFNN LTP  A+AEEMPN+ EEE++GVIGTIKSIFDPNERTK
Subjt:  MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTK

Query:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
        SGK+LPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q VVQE
Subjt:  SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
SwissProt top hitse value%identityAlignment
Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic7.4e-3069.47Show/hide
Query:  SSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTKSGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
        S  QA+     + +E +GV+G  K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+PKD AKFRR+ADAAKESIRDYLSNW G++TV  E
Subjt:  SSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTKSGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
Arabidopsis top hitse value%identityAlignment
AT1G05385.1 photosystem II 11 kDa protein-related5.2e-3169.47Show/hide
Query:  SSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTKSGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE
        S  QA+     + +E +GV+G  K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+PKD AKFRR+ADAAKESIRDYLSNW G++TV  E
Subjt:  SSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTKSGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCATTTATTCATGCAAAGATCTGCCCTACGACTATTTCAACATTGGATAGAAGCTTAATAAGTGAATATGGTCGTAAACTACCATCCAGGTCTCGAGTAGTGCT
TCCATATCAAGAAGTTTGTAGACGTCATTTGGTATGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTTCGGCCCAGGCCGAAGAAA
TGCCAAATAACATGGAGGAAGAGGATGATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAAAGAACCAAATCAGGGAAAATATTGCCAAAGGCTTACTTG
AAGTCTGCAAGGGAGGTGGTGAAAACGCTGCGTGAGTCATTGCAGGAAGACCCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTCGTGA
CTATTTAAGCAATTGGTTGGGGAAACAAACAGTTGTTCAAGAGGTATGA
mRNA sequenceShow/hide mRNA sequence
AGGGGTATTGCTGAGATGAACCAGGGGTATAGCTGGAGTAACTAAGAAGAACGAAGAGATGGCTGCATTTATTCATGCAAAGATCTGCCCTACGACTATTTCAACATTGG
ATAGAAGCTTAATAAGTGAATATGGTCGTAAACTACCATCCAGGTCTCGAGTAGTGCTTCCATATCAAGAAGTTTGTAGACGTCATTTGGTATGGAATGGCATGTCATTG
GTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTTCGGCCCAGGCCGAAGAAATGCCAAATAACATGGAGGAAGAGGATGATGGAGTTATCGGGACGATCAAATC
AATATTTGATCCAAATGAAAGAACCAAATCAGGGAAAATATTGCCAAAGGCTTACTTGAAGTCTGCAAGGGAGGTGGTGAAAACGCTGCGTGAGTCATTGCAGGAAGACC
CCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTCGTGACTATTTAAGCAATTGGTTGGGGAAACAAACAGTTGTTCAAGAGGTATGACAA
GGGAAAAACAGATGATGTTACTTCATGAATGATGATCATAAGGACTTTATAATAACATCGCTCACTCACGTGCAGGAATCTTACGTTGTATTAGAGAAAGCAATTAGGTC
GTTGGCAGGATTTTATGCAAAGGCTGGGCCATCTGCGCCACTGCCAGAAGCGGTTAAATCTGATATTCTGGATGATTTGGATAAGGTTGAAGAATCCTTGTAA
Protein sequenceShow/hide protein sequence
MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDDGVIGTIKSIFDPNERTKSGKILPKAYL
KSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEV