CuGenDBv2

Gene ID	CSPI07G10720
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty1-copia retrotransposon protein
Genome location	Chr7:8833620..8833988
RNA-Seq Expression	CSPI07G10720
Synteny	CSPI07G10720
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036643.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

7.2e-43

78.95

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Query:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC
        VKK   IDPEKY K+NKT+R HLL+HMSDPMFDLFV QKS KDIW  LES YGG+DA RK Y+V K LQFQMTDDKPVVEQIHEY NLVANVLSEGMKMC
Subjt:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC

Query:  EILEANVLLENSLP
        EIL+ANVLLE   P
Subjt:  EILEANVLLENSLP

KAA0042223.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

7.2e-43

78.95

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Query:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC
        VKK   IDPEKY K+NKT+R HLL+HMSDPMFDLFV QKS KDIW  LES YGG+DA RK Y+V K LQFQMTDDKPVVEQIHEY NLVANVLSEGMKMC
Subjt:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC

Query:  EILEANVLLENSLP
        EIL+ANVLLE   P
Subjt:  EILEANVLLENSLP

TYK04957.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

7.2e-43

78.95

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Query:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC
        VKK   IDPEKY K+NKT+R HLL+HMSDPMFDLFV QKS KDIW  LES YGG+DA RK Y+V K LQFQMTDDKPVVEQIHEY NLVANVLSEGMKMC
Subjt:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC

Query:  EILEANVLLENSLP
        EIL+ANVLLE   P
Subjt:  EILEANVLLENSLP

TYK11996.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

7.2e-43

78.95

Show/hide

Query:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC
        VKK   IDPEKY K+NKT+R HLL+HMSDPMFDLFV QKS KDIW  LES YGG+DA RK Y+V K LQFQMTDDKPVVEQIHEY NLVANVLSEGMKMC
Subjt:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC

Query:  EILEANVLLENSLP
        EIL+ANVLLE   P
Subjt:  EILEANVLLENSLP

TYK26791.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

7.2e-43

78.95

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Query:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC
        VKK   IDPEKY K+NKT+R HLL+HMSDPMFDLFV QKS KDIW  LES YGG+DA RK Y+V K LQFQMTDDKPVVEQIHEY NLVANVLSEGMKMC
Subjt:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC

Query:  EILEANVLLENSLP
        EIL+ANVLLE   P
Subjt:  EILEANVLLENSLP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T166 Ty1-copia retrotransposon protein

3.5e-43

78.95

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Query:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC
        VKK   IDPEKY K+NKT+R HLL+HMSDPMFDLFV QKS KDIW  LES YGG+DA RK Y+V K LQFQMTDDKPVVEQIHEY NLVANVLSEGMKMC
Subjt:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC

Query:  EILEANVLLENSLP
        EIL+ANVLLE   P
Subjt:  EILEANVLLENSLP

A0A5A7TG73 Ty1-copia retrotransposon protein

3.5e-43

78.95

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Query:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC
        VKK   IDPEKY K+NKT+R HLL+HMSDPMFDLFV QKS KDIW  LES YGG+DA RK Y+V K LQFQMTDDKPVVEQIHEY NLVANVLSEGMKMC
Subjt:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC

Query:  EILEANVLLENSLP
        EIL+ANVLLE   P
Subjt:  EILEANVLLENSLP

A0A5D3BZH6 Ty1-copia retrotransposon protein

3.5e-43

78.95

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Query:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC
        VKK   IDPEKY K+NKT+R HLL+HMSDPMFDLFV QKS KDIW  LES YGG+DA RK Y+V K LQFQMTDDKPVVEQIHEY NLVANVLSEGMKMC
Subjt:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC

Query:  EILEANVLLENSLP
        EIL+ANVLLE   P
Subjt:  EILEANVLLENSLP

A0A5D3CNJ2 Ty1-copia retrotransposon protein

3.5e-43

78.95

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Query:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC
        VKK   IDPEKY K+NKT+R HLL+HMSDPMFDLFV QKS KDIW  LES YGG+DA RK Y+V K LQFQMTDDKPVVEQIHEY NLVANVLSEGMKMC
Subjt:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC

Query:  EILEANVLLENSLP
        EIL+ANVLLE   P
Subjt:  EILEANVLLENSLP

A0A5D3DSQ3 Ty1-copia retrotransposon protein

3.5e-43

78.95

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Query:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC
        VKK   IDPEKY K+NKT+R HLL+HMSDPMFDLFV QKS KDIW  LES YGG+DA RK Y+V K LQFQMTDDKPVVEQIHEY NLVANVLSEGMKMC
Subjt:  VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMC

Query:  EILEANVLLENSLP
        EIL+ANVLLE   P
Subjt:  EILEANVLLENSLP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

3.1e-07

21.7

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Query:  EKYKKNNKTIRRHLLSHMSDPMFDLFVTQ-KSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMCEILEANVL
        +K+ +++     HL++ +SD ++  +  + K  K++W  L+  Y  ++++ K   V K ++F+M +++P++EQ+  +  +  +++S GM + E    + +
Subjt:  EKYKKNNKTIRRHLLSHMSDPMFDLFVTQ-KSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMCEILEANVL

Query:  LENSLP
        +    P
Subjt:  LENSLP

Sequences

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CDS sequence

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GTAAAGAAAGCGTCTGCAATTGATCCCGAGAAGTATAAGAAGAATAACAAGACAATTCGCAGGCATCTGTTGAGCCATATGTCAGATCCGATGTTTGACTTATTTGTAAC
CCAAAAATCTACCAAGGACATCTGGTGCATTCTGGAGTCTCACTATGGTGGAAACGACGCTAGGCGGAAGAACTACATTGTGGAAAAATGCTTGCAATTCCAAATGACAG
ATGACAAGCCAGTTGTGGAACAAATACATGAGTATGGAAATCTGGTGGCAAATGTCTTATCGGAAGGTATGAAGATGTGTGAGATACTTGAAGCTAACGTTCTGCTGGAA
AATTCCCTCCCTATTGGAGCGACTACCAAAATTACATGA

mRNA sequence

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Protein sequence

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VKKASAIDPEKYKKNNKTIRRHLLSHMSDPMFDLFVTQKSTKDIWCILESHYGGNDARRKNYIVEKCLQFQMTDDKPVVEQIHEYGNLVANVLSEGMKMCEILEANVLLE
NSLPIGATTKIT

CSPI07G10720 (gene) of Cucumber (PI 183967) v1 genome