CuGenDBv2

Gene ID	CSPI07G12030
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	nuclear pore complex protein NUP155
Genome location	Chr7:10273041..10273903
RNA-Seq Expression	CSPI07G12030
Synteny	CSPI07G12030
Gene Ontology terms	GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery (biological process) GO:0006405 - RNA export from nucleus (biological process) GO:0006606 - protein import into nucleus (biological process) GO:0036228 - protein localization to nuclear inner membrane (biological process) GO:0044611 - nuclear pore inner ring (cellular component) GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domains	IPR004870 - Nucleoporin, Nup155-like IPR014908 - Nucleoporin, Nup133/Nup155-like, N-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF3945225.1 hypothetical protein CMV_028386 [Castanea mollissima]

2.7e-26

94.92

Show/hide

Query:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW
        YTTHPREWPP+VEVVDTWELPPVLVERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Subjt:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

TYK20328.1 nuclear pore complex protein NUP155 [Cucumis melo var. makuwa]

3.5e-26

93.22

Show/hide

Query:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW
        YTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Subjt:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

XP_008464720.1 PREDICTED: nuclear pore complex protein NUP155 [Cucumis melo]

3.5e-26

93.22

Show/hide

Query:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW
        YTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Subjt:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

XP_011654516.2 nuclear pore complex protein NUP155 isoform X1 [Cucumis sativus]

3.5e-26

93.22

Show/hide

Query:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW
        YTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Subjt:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

XP_023922513.1 nuclear pore complex protein NUP155 isoform X1 [Quercus suber]

2.7e-26

94.92

Show/hide

Query:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW
        YTTHPREWPP+VEVVDTWELPPVLVERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Subjt:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K661 Nucleoporin_N domain-containing protein

3.2e-33

94.2

Show/hide

Query:  MHVWEISRLNYTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW
        MHVWEISRLNYTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Subjt:  MHVWEISRLNYTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

A0A0A0KJ04 Nucleoporin_N domain-containing protein

1.7e-26

93.22

Show/hide

Query:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW
        YTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Subjt:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

A0A5A7TDD9 Nuclear pore complex protein NUP155

1.7e-26

93.22

Show/hide

Query:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW
        YTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Subjt:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

A0A5D3D9Z9 Nuclear pore complex protein NUP155

1.7e-26

93.22

Show/hide

Query:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW
        YTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Subjt:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

A0A7N2L7M5 Uncharacterized protein

1.7e-26

93.22

Show/hide

Query:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW
        YTTHPREWPP+VEVVDTWELPPVL+ERYNAAGGEGTALCGI PEIR AWASVDNSLFLW
Subjt:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

SwissProt top hits

e value

%identity

Alignment

F4HXV6 Nuclear pore complex protein NUP155

8.1e-26

83.05

Show/hide

Query:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW
        Y+THPREWPP++EV +TWELP VL+ERYN AGGEGTALCGI PEIR AWASVDNSLFLW
Subjt:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

Arabidopsis top hits

e value

%identity

Alignment

AT1G14850.1 nucleoporin 155

5.7e-27

83.05

Show/hide

Query:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW
        Y+THPREWPP++EV +TWELP VL+ERYN AGGEGTALCGI PEIR AWASVDNSLFLW
Subjt:  YTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGCATGTCTGGGAAATTTCAAGGCTAAATTATACAACCCACCCCAGGGAGTGGCCTCCTATAGTGGAAGTGGTGGATACTTGGGAGTTACCTCCAGTGCTCGTAGAAAG
ATATAATGCTGCTGGTGGGGAAGGAACTGCCTTATGTGGAATACTTCCAGAAATACGAATAGCTTGGGCATCTGTTGACAATTCTTTATTTCTTTGGTGATTTGACAAGC
GGTGAGTATAATTTGGCCATGTTAGATAATTTCATTATTAATGTGTATTTTGAAATCTAATTGTGATCCACAATATTGTTTGTTGCACCAAGATATCTTGTCAAATTGAA
CATTCAACGCATTTGTAATTGTGATGATTTTGGAATTAATGTTTGGTCAA

Protein sequence

Show/hide protein sequence

MHVWEISRLNYTTHPREWPPIVEVVDTWELPPVLVERYNAAGGEGTALCGILPEIRIAWASVDNSLFLW

CSPI07G12030 (gene) of Cucumber (PI 183967) v1 genome