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CSPI07G12470 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI07G12470
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase
Genome locationChr7:10751721..10752335
RNA-Seq ExpressionCSPI07G12470
SyntenyCSPI07G12470
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032653.1 Beta-galactosidase [Cucumis melo var. makuwa]2.2e-0771.74Show/hide
Query:  GIFRTHRPAFLPNHNRLATSSLQLHRSHTRSQFGFPHMRCLVFMHC
        GIF+TH PAFLP+ NR ATSSLQ HRS  R Q GFPHMR L  MHC
Subjt:  GIFRTHRPAFLPNHNRLATSSLQLHRSHTRSQFGFPHMRCLVFMHC

KAA0055536.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-0452.05Show/hide
Query:  MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAV------------GIFRTHRPAFLPNHNRLATSSLQLH
        MVSK DIEET D+QTL+GTL EG  +DI+A V A V             +F TH    L N NR ATSSLQ H
Subjt:  MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAV------------GIFRTHRPAFLPNHNRLATSSLQLH

KAA0062938.1 uncharacterized protein E6C27_scaffold468G00320 [Cucumis melo var. makuwa]6.6e-0440Show/hide
Query:  MVSKRDIEETLDNQTLNGTLVEGTTIDIS--AVVTAAVG------IFRTHRPAF---LPNHNRLATSSLQLHR-SHTRSQFGFPHMRCLVFMHCCLRLHL
        MVS+ DIEETLD+Q L+GTLVEGT +DIS  AVV A +        +R   P      P+ NR  ++   LH  S     +  P +    FM    RLHL
Subjt:  MVSKRDIEETLDNQTLNGTLVEGTTIDIS--AVVTAAVG------IFRTHRPAF---LPNHNRLATSSLQLHR-SHTRSQFGFPHMRCLVFMHCCLRLHL

Query:  H---CMHHHTHCRICYCTCHLQDLPSHRPWFSLLL
        H     +  THCR  +     +DL + R  FSLLL
Subjt:  H---CMHHHTHCRICYCTCHLQDLPSHRPWFSLLL

KAA0063757.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0477.78Show/hide
Query:  MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAV
        MVSKRDIE+TLDNQTL+GTL +GT +DISAVVT  V
Subjt:  MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAV

TYK01389.1 Copia protein [Cucumis melo var. makuwa]5.1e-0450.68Show/hide
Query:  MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAV------------GIFRTHRPAFLPNHNRLATSSLQLH
        MVS+ DIEET D+QTL+GTL EG  +DI+A V A V             +F TH    L N NR ATSSLQ H
Subjt:  MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAV------------GIFRTHRPAFLPNHNRLATSSLQLH

TrEMBL top hitse value%identityAlignment
A0A5A7UMP8 Reverse transcriptase8.4e-0552.05Show/hide
Query:  MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAV------------GIFRTHRPAFLPNHNRLATSSLQLH
        MVSK DIEET D+QTL+GTL EG  +DI+A V A V             +F TH    L N NR ATSSLQ H
Subjt:  MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAV------------GIFRTHRPAFLPNHNRLATSSLQLH

A0A5A7V5P9 Uncharacterized protein3.2e-0440Show/hide
Query:  MVSKRDIEETLDNQTLNGTLVEGTTIDIS--AVVTAAVG------IFRTHRPAF---LPNHNRLATSSLQLHR-SHTRSQFGFPHMRCLVFMHCCLRLHL
        MVS+ DIEETLD+Q L+GTLVEGT +DIS  AVV A +        +R   P      P+ NR  ++   LH  S     +  P +    FM    RLHL
Subjt:  MVSKRDIEETLDNQTLNGTLVEGTTIDIS--AVVTAAVG------IFRTHRPAF---LPNHNRLATSSLQLHR-SHTRSQFGFPHMRCLVFMHCCLRLHL

Query:  H---CMHHHTHCRICYCTCHLQDLPSHRPWFSLLL
        H     +  THCR  +     +DL + R  FSLLL
Subjt:  H---CMHHHTHCRICYCTCHLQDLPSHRPWFSLLL

A0A5D3BTH6 Copia protein2.4e-0450.68Show/hide
Query:  MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAV------------GIFRTHRPAFLPNHNRLATSSLQLH
        MVS+ DIEET D+QTL+GTL EG  +DI+A V A V             +F TH    L N NR ATSSLQ H
Subjt:  MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAV------------GIFRTHRPAFLPNHNRLATSSLQLH

A0A5D3C538 Reverse transcriptase6.4e-0577.78Show/hide
Query:  MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAV
        MVSKRDIE+TLDNQTL+GTL +GT +DISAVVT  V
Subjt:  MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAV

A0A5D3DIW2 Beta-galactosidase1.1e-0771.74Show/hide
Query:  GIFRTHRPAFLPNHNRLATSSLQLHRSHTRSQFGFPHMRCLVFMHC
        GIF+TH PAFLP+ NR ATSSLQ HRS  R Q GFPHMR L  MHC
Subjt:  GIFRTHRPAFLPNHNRLATSSLQLHRSHTRSQFGFPHMRCLVFMHC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCAAAGCGGGATATCGAAGAGACCCTAGACAATCAAACACTTAATGGAACCCTAGTAGAAGGGACAACCATCGACATCAGTGCAGTCGTCACCGCCGCAGTTGG
CATCTTCAGAACCCATCGGCCAGCCTTCCTGCCCAACCACAATCGTCTGGCAACCAGCAGCCTTCAGCTGCACAGGTCCCACACGCGCAGCCAATTTGGATTCCCTCATA
TGCGCTGCCTGGTCTTCATGCACTGCTGCCTGCGCCTACACCTTCACTGTATGCACCACCACACACACTGTCGCATATGTTACTGCACGTGCCATCTTCAGGACTTGCCC
AGCCACCGACCTTGGTTCAGTCTTCTGCTGCAGGTGTGA
mRNA sequenceShow/hide mRNA sequence
TTTATTATCATAAGAAAATAATAAGAGATATCAGCATCGTGGTTATTCTTCTTGTATTAGGGTTTTTGCGTAAATTTGTGTTCGTTCTATAGCTCTACTTTTAATATGGT
ATCAAAGCGGGATATCGAAGAGACCCTAGACAATCAAACACTTAATGGAACCCTAGTAGAAGGGACAACCATCGACATCAGTGCAGTCGTCACCGCCGCAGTTGGCATCT
TCAGAACCCATCGGCCAGCCTTCCTGCCCAACCACAATCGTCTGGCAACCAGCAGCCTTCAGCTGCACAGGTCCCACACGCGCAGCCAATTTGGATTCCCTCATATGCGC
TGCCTGGTCTTCATGCACTGCTGCCTGCGCCTACACCTTCACTGTATGCACCACCACACACACTGTCGCATATGTTACTGCACGTGCCATCTTCAGGACTTGCCCAGCCA
CCGACCTTGGTTCAGTCTTCTGCTGCAGGTGTGATTGCGCCGCCTCCTACTAGGTTAGTCGCAAACCCTAGTGGTTGCCCGGAGGTTGGAAATCCAGCCCAGTCGACCTT
CCCAGCACAGTCTAAGTGCCCATGAGCAGGGTTCATCTCTCAGTATTGCTCAACATCAGCAGGAC
Protein sequenceShow/hide protein sequence
MVSKRDIEETLDNQTLNGTLVEGTTIDISAVVTAAVGIFRTHRPAFLPNHNRLATSSLQLHRSHTRSQFGFPHMRCLVFMHCCLRLHLHCMHHHTHCRICYCTCHLQDLP
SHRPWFSLLLQV